View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1090_low_6 (Length: 507)

Name: NF1090_low_6
Description: NF1090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1090_low_6
NF1090_low_6
[»] chr2 (2 HSPs)
chr2 (163-497)||(30868179-30868510)
chr2 (30-137)||(30868070-30868177)
[»] chr5 (2 HSPs)
chr5 (31-493)||(24839426-24839886)
chr5 (165-389)||(19698759-19698982)
[»] chr1 (2 HSPs)
chr1 (32-490)||(23517124-23517579)
chr1 (32-491)||(23512794-23513249)
[»] chr6 (1 HSPs)
chr6 (268-390)||(15578048-15578170)
[»] chr7 (1 HSPs)
chr7 (277-389)||(18499223-18499335)
[»] chr3 (2 HSPs)
chr3 (317-389)||(14419556-14419628)
chr3 (31-137)||(14419795-14419901)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 163 - 497
Target Start/End: Original strand, 30868179 - 30868510
Alignment:
Q  163 gttaaagcatccaagatctccttcctcttttggtatctgaaaatcttgaaccacacaacatgtttttgttagagaaataaatccctccttagaagcctcc 262  Q
    ||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30868179 gttaaagcatccaggatctccttc---ttttggtatctgaaaatcttgaaccacacaacatgtttttgttagagaaataaatccctccttagaagcctcc 30868275  T
Q  263 tcgaccagctttaggatctcttgcaagaatttcatacaacaatggcttttttcgaccatttcttttatgagcatactaaccataaacttttctagagctt 362  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  30868276 tcgaccagcttcaggatctcttacaagaatttcatacaacaagggcttttttcgaccatttcttttatgagcatattaaccgtaaacttttctagagctt 30868375  T
Q  363 tgatgagatcttgaaaattttcatttttctggatgctcatctactcctatctacccacttaaggttttgccttcttctaagacatgtggtttgtctttct 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30868376 tgatgagatcttgaaaattttcatttttctggatgctcatctactcctatctacccacctaaggttttgccttcttctaagacatgtggtttgtctttct 30868475  T
Q  463 caactttcgtctctgacaccctatcacttcctttg 497  Q
    |||||||||||||||||||||||||||||||||||    
T  30868476 caactttcgtctctgacaccctatcacttcctttg 30868510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 30868070 - 30868177
Alignment:
Q  30 tgacattcataaaacaaggacgtaatgttagaccctcgatccaattaaaagtggatagcagcatcagattgccatttgcccgtagatcacataaagcttc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  30868070 tgacattcataaaacaaggacgtaatgttagaccctcgatccaattaaaactggatagcagcatcagattgcgatttgcccctagatcacataaagcttc 30868169  T
Q  130 tcctacaa 137  Q
    ||||||||    
T  30868170 tcctacaa 30868177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 31 - 493
Target Start/End: Complemental strand, 24839886 - 24839426
Alignment:
Q  31 gacattcataaaacaaggacgtaatgttagaccctcgatccaattaaaagtggatagcagcatcagattgccatttgcccgtagatcacataaagcttct 130  Q
    |||||||||||| ||||||||||||||||| |||   || || || ||||||||||    ||||| ||| |||||| |||  | ||||||||||||||||    
T  24839886 gacattcataaagcaaggacgtaatgttagtcccctaattcagttgaaagtggataaagacatcatattaccattttcccccatatcacataaagcttct 24839787  T
Q  131 cctacaacaacattttctactataactgtaacgttaaagcatccaagatctccttcctcttttggtatctgaaaatcttgaaccacacaacatgtttttg 230  Q
    || |||| ||||||  |||| ||||  | ||||||||| |||||| |||||||||||||| | |||| |||||||| || ||| ||||||||| ||||||    
T  24839786 cccacaa-aacattccctacaataataggaacgttaaaacatccaggatctccttcctctctaggtacctgaaaatatttaacaacacaacatttttttg 24839688  T
Q  231 ttagagaaataaatccctccttagaagcctcctcgaccagctttaggatctcttgcaagaatttcatacaacaatggcttttttcgaccatttcttttat 330  Q
    |||||||||||||||| |||||| ||  ||| ||  | | ||| |||||||| | ||||||||| | ||||||  |||  ||||||||||||||||| ||    
T  24839687 ttagagaaataaatccttccttaaaaagctcatcctcaaacttcaggatctcctacaagaattttaaacaacaggggcgcttttcgaccatttctttcat 24839588  T
Q  331 gagcatactaaccataaacttttctagagctttgatgagatcttgaaaattttcatttttctggatgctcatctactcctatctacccacttaaggtttt 430  Q
    | | ||| || |  || ||||||||| ||||||||||||||||||||||||||| ||||||||| | |||| | |||||||||| ||||| |||||| ||    
T  24839587 gggtatattagctttatacttttctaaagctttgatgagatcttgaaaattttc-tttttctgggtactcaccaactcctatctccccacctaaggtctt 24839489  T
Q  431 gccttcttctaagacatgtggtttgtctttctcaactttcgtctctgacaccctatcacttcc 493  Q
    | |||||||||||||||||||| |||||| ||| ||||||||||| |||||||||| ||||||    
T  24839488 gtcttcttctaagacatgtggtgtgtcttcctcgactttcgtctcagacaccctattacttcc 24839426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 165 - 389
Target Start/End: Original strand, 19698759 - 19698982
Alignment:
Q  165 taaagcatccaagatctccttcctcttttggtatctgaaaatcttgaaccacacaacatgtttttgttagagaaataaatccctccttagaagcctcctc 264  Q
    ||||| ||||| || |||||||||||  |||||  |||||||| ||||| ||||||||  |||| |||| | |||||||| | |||||||||| || |||    
T  19698759 taaagtatccatgacctccttcctctcgtggtacttgaaaatcatgaacaacacaacaatttttggttacataaataaattcttccttagaaggcttctc 19698858  T
Q  265 gaccagctttaggatctcttgcaagaatttcatacaacaatggcttttttcgaccatttcttttatgagcatactaaccataaacttttctagagctttg 364  Q
       ||||||||||||| | | |||||||||||||||||||   |||| ||||||||||||||||||| ||||| | ||  |||| ||||||| ||||||     
T  19698859 cttcagctttaggatcacctacaagaatttcatacaacaagaactttgttcgaccatttcttttatgggcata-tgactttaaatttttctaaagctttt 19698957  T
Q  365 atgagatcttgaaaattttcatttt 389  Q
    |||||||||||||||||| ||||||    
T  19698958 atgagatcttgaaaatttccatttt 19698982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 32 - 490
Target Start/End: Original strand, 23517124 - 23517579
Alignment:
Q  32 acattcataaaacaaggacgtaatgttagaccctcga-tccaattaaaagtggatagcagcatcagattgccatttgcccgtagatcacataaagcttct 130  Q
    |||||||| ||||||||||||||||||| |||||| | || |||||||||||| || |  |||||  || |||||||||| |||||||||||| ||||||    
T  23517124 acattcatgaaacaaggacgtaatgtta-accctctaatctaattaaaagtggctaacgacatcaagtttccatttgccc-tagatcacataaggcttct 23517221  T
Q  131 cctacaacaacattttctactataactgtaacgttaaagcatccaagatctccttcctcttttggtatctgaaaatcttgaaccacacaacatgtttttg 230  Q
    ||||||| |||| || ||||  |||  | ||||||||| ||||    ||||| ||| || ||   || ||||||||||||||| ||||||||| ||||||    
T  23517222 cctacaaaaacagttcctacagtaataggaacgttaaaacatcttgaatctcattcttccttctatacctgaaaatcttgaacaacacaacatttttttg 23517321  T
Q  231 ttagagaaataaatccctccttagaagcctcctcgaccagctttaggatctcttgcaagaatttcatacaacaatggcttttttcgaccatttcttttat 330  Q
    |||||||||| ||| ||||||| |||   |||||  ||||||| | |||||| | ||| |||||||||||| |  | || ||||||||||||| ||||||    
T  23517322 ttagagaaatgaatacctccttcgaacattcctcctccagcttcaagatctcct-caaaaatttcatacaaaagggactcttttcgaccatttattttat 23517420  T
Q  331 gagcatactaaccataaacttttctagagctttgatgagatcttgaaaattttcatttttctggatgctcatctactcctatctacccacttaaggtttt 430  Q
    | ||||| ||||  |||||| || |||| ||||||||||||||||||||| | || || ||| | ||| |||  |||| | ||| || || |||||| ||    
T  23517421 gggcatattaactttaaactgttatagaactttgatgagatcttgaaaatctcca-ttctcttgctgcccatgaactcttttctcccaacctaaggtctt 23517519  T
Q  431 gccttcttctaagacatgtggtttgtctttctcaactttcgtctctgacaccctatcact 490  Q
    ||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  23517520 gcctttttctaaggcatgtggtgtgtctttctcaacttttgtctctgacaccctatcact 23517579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 32 - 491
Target Start/End: Original strand, 23512794 - 23513249
Alignment:
Q  32 acattcataaaacaaggacgtaatgttagaccctcga-tccaattaaaagtggatagcagcatcagattgccatttgcccgtagatcacataaagcttct 130  Q
    |||||||| ||||||||||||||| ||| |||||| | ||||||||||||||| || |  |||||  || |||||| ||  |||||||||||| ||||||    
T  23512794 acattcatgaaacaaggacgtaatctta-accctctaatccaattaaaagtggctaacgacatcaagtttccattttcc--tagatcacataaggcttct 23512890  T
Q  131 cctacaacaacattttctactataactgtaacgttaaagcatccaagatctccttcctcttttggtatctgaaaatcttgaaccacacaacatgttt-tt 229  Q
     |||||| |||| || ||||  |||    ||||||||| ||||    ||||| ||| || ||   || ||||||||||||||| ||||||||| ||| ||    
T  23512891 gctacaaaaacagttcctacagtaatatgaacgttaaaacatctcgaatctcattcttccttctatacctgaaaatcttgaacaacacaacatttttatt 23512990  T
Q  230 gttagagaaataaatccctccttagaagcctcctcgaccagctttaggatctcttgcaagaatttcatacaacaatggcttttttcgaccatttctttta 329  Q
     |||||||||| ||||||||||| |||   |||||  | ||||| | |||||| | |||||||||||||||| |  | || |||| |||||||| |||||    
T  23512991 tttagagaaatgaatccctccttcgaacattcctcctcgagcttcatgatctcct-caagaatttcatacaaaagggactctttttgaccatttatttta 23513089  T
Q  330 tgagcatactaaccataaacttttctagagctttgatgagatcttgaaaattttcatttttctggatgctcatctactcctatctacccacttaaggttt 429  Q
    || ||||| ||||  |||||| || |||| |||||||||||| ||  ||| | ||| || ||| | ||| |||  |||| | ||| || || |||||| |    
T  23513090 tgggcatattaactttaaactgttatagaactttgatgagatttt--aaaatctcaattctcttgctgcccatgaactcttttctcccaacctaaggtct 23513187  T
Q  430 tgccttcttctaagacatgtggtttgtctttctcaactttcgtctctgacaccctatcactt 491  Q
    |||||| ||||||| ||||| || |||||||||||||||| |||||||||||||||||||||    
T  23513188 tgcctttttctaaggcatgtagtgtgtctttctcaacttttgtctctgacaccctatcactt 23513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 390
Target Start/End: Original strand, 15578048 - 15578170
Alignment:
Q  268 cagctttaggatctcttgcaagaatttcatacaacaatggcttttttcgaccatttcttttatgagcatactaaccataaacttttctagagctttgatg 367  Q
    |||||| |||||||| ||||| ||||||||||||||||| || |||||||| |||||||| ||| | ||| |  |  ||| |||||||| |||||| | |    
T  15578048 cagcttcaggatctcctgcaaaaatttcatacaacaatgactcttttcgacaatttctttgatgggtatatttgctttaatcttttctaaagctttaacg 15578147  T
Q  368 agatcttgaaaattttcattttt 390  Q
    || ||||||||||||||||||||    
T  15578148 agctcttgaaaattttcattttt 15578170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 389
Target Start/End: Complemental strand, 18499335 - 18499223
Alignment:
Q  277 gatctcttgcaagaatttcatacaacaatggcttttttcgaccatttcttttatgagcatactaaccataaacttttctagagctttgatgagatcttga 376  Q
    ||||||||| |  |||||||| |||||| |  ||| ||||||||||||||| ||| ||||  ||||  ||||||||||||   |||||||||| ||||||    
T  18499335 gatctcttgaagaaatttcatgcaacaaggaatttgttcgaccatttctttgatgggcatgttaactttaaacttttctaacactttgatgagctcttga 18499236  T
Q  377 aaattttcatttt 389  Q
    |||||||| ||||    
T  18499235 aaattttcttttt 18499223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 14419628 - 14419556
Alignment:
Q  317 accatttcttttatgagcatactaaccataaacttttctagagctttgatgagatcttgaaaattttcatttt 389  Q
    ||||||||||| |||| |||| | ||  |||||||||||| |||||||||||| |||| ||||||||||||||    
T  14419628 accatttctttgatgaacatatttactttaaacttttctaaagctttgatgagctcttaaaaattttcatttt 14419556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 14419901 - 14419795
Alignment:
Q  31 gacattcataaaacaaggacgtaatgttagaccctcgatccaattaaaagtggatagcagcatcagattgccatttgcccgtagatcacataaagcttct 130  Q
    |||||||||||||||||| | ||||||||  ||  ||||||  || |||||||||| |  |||||||||||||  ||| |  |||||||| |||||||||    
T  14419901 gacattcataaaacaaggtcttaatgttaatcctccgatccggttgaaagtggataacgacatcagattgccacctgctcccagatcacaaaaagcttct 14419802  T
Q  131 cctacaa 137  Q
    |||||||    
T  14419801 cctacaa 14419795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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