View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10910_high_15 (Length: 205)
Name: NF10910_high_15
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_high_15 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 4599736 - 4599549
Alignment:
| Q |
1 |
acaaatgagtggtaaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttaga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4599736 |
acaaatgagtggtaaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttaga |
4599637 |
T |
|
| Q |
101 |
ggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcactg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4599636 |
ggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactg |
4599549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 4612275 - 4612437
Alignment:
| Q |
3 |
aaatgagtggtaaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagagg |
102 |
Q |
| |
|
||||||||| | ||||||||||||||| || ||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4612275 |
aaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagagg |
4612374 |
T |
|
| Q |
103 |
attttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4612375 |
ctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4612437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 4581575 - 4581423
Alignment:
| Q |
13 |
taaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacata |
112 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||| |||||| | |||||| ||||||||| | |||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
4581575 |
taaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacata |
4581476 |
T |
|
| Q |
113 |
accttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4581475 |
acctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4581423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 4618859 - 4618689
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
||||||||||| || ||||||||| |||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
4618859 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
4618760 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcac |
186 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||||||||| || || || |||||||||| |
|
|
| T |
4618759 |
tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcac |
4618689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 4507469 - 4507322
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
|||||||||||| || |||||||||| ||||| ||||| ||||||||||||| |||||||||| ||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
4507469 |
aaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacc |
4507370 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggt |
163 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4507369 |
tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggt |
4507322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 4265631 - 4265796
Alignment:
| Q |
20 |
ccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcg |
119 |
Q |
| |
|
|||||||| || ||||||||| |||| |||||| |||||||| |||| |||| |||| |||| |||||||||||||||| ||| |||||||||| | |
|
|
| T |
4265631 |
ccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttg |
4265730 |
T |
|
| Q |
120 |
tgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttca |
185 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
4265731 |
tcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttca |
4265796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 4513549 - 4513719
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
|||||||||||| || |||||||||| |||| |||||| ||||||||||| | ||| | ||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
4513549 |
aaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacc |
4513648 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcac |
186 |
Q |
| |
|
|| || |||||||| |||||||||||||| |||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
4513649 |
tttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcac |
4513719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 4558696 - 4558511
Alignment:
| Q |
3 |
aaatgagtggtaaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagagg |
102 |
Q |
| |
|
||||||||| ||||||||||||||| || || ||||||| |||| |||||| ||||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
4558696 |
aaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagagg |
4558597 |
T |
|
| Q |
103 |
attttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcactg |
188 |
Q |
| |
|
|||| ||||||||| || ||||| || ||||| |||||||| |||||||| ||||||||||| ||| | || |||||||||||| |
|
|
| T |
4558596 |
atttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactg |
4558511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 4471468 - 4471300
Alignment:
| Q |
20 |
ccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcg |
119 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||| |||||||| |||| | |||||||||||| |||||||||||||||| ||| ||||||| || | |
|
|
| T |
4471468 |
ccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttg |
4471369 |
T |
|
| Q |
120 |
tgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcactg |
188 |
Q |
| |
|
| ||||| || |||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||| |
|
|
| T |
4471368 |
tcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactg |
4471300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 4594568 - 4594419
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
|||||||||||| || ||||||||| |||| |||||| | |||| |||||||| ||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
4594568 |
aaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacc |
4594469 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
|| || ||||| || |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4594468 |
tttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtcc |
4594419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 4603668 - 4603515
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
||||| |||||| || |||||||||| |||| |||||| ||||||||||| | | ||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
4603668 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
4603569 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaat |
169 |
Q |
| |
|
|| || |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4603568 |
tttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaat |
4603515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 4623868 - 4623716
Alignment:
| Q |
13 |
taaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacata |
112 |
Q |
| |
|
|||||| |||||||| || |||||| ||| |||| |||||| ||||||||||||| |||||||||||||| ||||| |||||| ||| ||| ||||| |
|
|
| T |
4623868 |
taaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacata |
4623769 |
T |
|
| Q |
113 |
accttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
||||| | ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623768 |
acctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4623716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 4627704 - 4627561
Alignment:
| Q |
20 |
ccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcg |
119 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||| ||||||||||||| | | ||||||||| | |||||||||||||| ||| |||||||||| | |
|
|
| T |
4627704 |
ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg |
4627605 |
T |
|
| Q |
120 |
tgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggt |
163 |
Q |
| |
|
| ||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
4627604 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggt |
4627561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 4488771 - 4488916
Alignment:
| Q |
20 |
ccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcg |
119 |
Q |
| |
|
||||||||||| || | ||||||||| |||||| |||||||| |||| | ||||||| ||| | |||||||||||||||||| |||||||||| | |
|
|
| T |
4488771 |
ccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg |
4488870 |
T |
|
| Q |
120 |
tgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488871 |
tcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4488916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 4565587 - 4565438
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
|||||||||||| || ||||||||| |||| |||||| | |||| |||||||| ||||||| ||||| |||||||||||||||||||| | |||||| |
|
|
| T |
4565587 |
aaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacc |
4565488 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
|| || ||||| || |||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
4565487 |
tttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtcc |
4565438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 4572536 - 4572376
Alignment:
| Q |
4 |
aatgagtggtaaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagagga |
103 |
Q |
| |
|
|||||||| ||||||||||||||| || || || |||| |||| |||||| ||||||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
4572536 |
aatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggt |
4572437 |
T |
|
| Q |
104 |
ttttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtc |
164 |
Q |
| |
|
||| ||||||||| || ||||| || |||||||||||||| |||||||| |||||||||| |
|
|
| T |
4572436 |
tttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtc |
4572376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 4258743 - 4258893
Alignment:
| Q |
13 |
taaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacata |
112 |
Q |
| |
|
|||||| |||||||| || |||||||||| |||| ||||| ||||||||||||| |||||||||| ||| |||||||| ||| ||| ||| ||||| |
|
|
| T |
4258743 |
taaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacata |
4258842 |
T |
|
| Q |
113 |
accttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggt |
163 |
Q |
| |
|
||||| || ||||| || || ||||||||||| |||||||||||||||||| |
|
|
| T |
4258843 |
acctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggt |
4258893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 4517894 - 4517749
Alignment:
| Q |
20 |
ccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcg |
119 |
Q |
| |
|
||||||||||| | | ||||| |||| |||||| |||||||||| || | ||||||||||| ||||||| |||||||| ||| |||||||||| | |
|
|
| T |
4517894 |
ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg |
4517795 |
T |
|
| Q |
120 |
tgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
4517794 |
tcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcc |
4517749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 4576015 - 4575866
Alignment:
| Q |
14 |
aaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataa |
113 |
Q |
| |
|
||||| ||||||||||| || | |||||||||| |||||| |||||||| |||| | ||| ||||||| | |||||||||||||| ||| |||||| |
|
|
| T |
4576015 |
aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa |
4575916 |
T |
|
| Q |
114 |
ccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggt |
163 |
Q |
| |
|
|||| || ||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
4575915 |
cctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggt |
4575866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 4462761 - 4462593
Alignment:
| Q |
20 |
ccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcg |
119 |
Q |
| |
|
|||||||| || |||||||||| |||| |||| |||||||| |||| | ||||||| ||| | |||||||||||||| ||| |||||||||| | |
|
|
| T |
4462761 |
ccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttg |
4462662 |
T |
|
| Q |
120 |
tgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcactg |
188 |
Q |
| |
|
| ||||| || ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
4462661 |
tcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactg |
4462593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 4482425 - 4482274
Alignment:
| Q |
14 |
aaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataa |
113 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||||| |||||||| |||| | ||| ||| ||| | |||||||||||||| ||| |||||| |
|
|
| T |
4482425 |
aaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataa |
4482326 |
T |
|
| Q |
114 |
ccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
|||| || |||||||| |||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
4482325 |
cctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtcc |
4482274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 4502943 - 4503012
Alignment:
| Q |
96 |
ttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
||||||||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtcc |
4503012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 4569587 - 4569483
Alignment:
| Q |
57 |
atatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatc |
156 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||||||| ||| |||||||||| || |||||||| |||||||||| ||||||||||| |
|
|
| T |
4569587 |
atatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aatcacaaacatttgctcaaatc |
4569492 |
T |
|
| Q |
157 |
aagaggtcc |
165 |
Q |
| |
|
||||||||| |
|
|
| T |
4569491 |
aagaggtcc |
4569483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 3173561 - 3173419
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
||||||||||||||| || | ||||| |||| |||||| |||||||| |||| | ||||||||||| | |||||| ||||||| ||| |||||||| |
|
|
| T |
3173561 |
aaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacc |
3173462 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaa |
158 |
Q |
| |
|
|| || ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
3173461 |
tttgtaaacactgaatacaatcacaaacggttgctcaaatcaa |
3173419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 4587203 - 4587045
Alignment:
| Q |
3 |
aaatgagtggtaaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagagg |
102 |
Q |
| |
|
||||||||| | |||||| ||||| || || || |||| |||| |||||| ||||||||||||| | |||||||| || ||||||||||| |||| |
|
|
| T |
4587203 |
aaatgagtgattcaaaacctcatgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgagg |
4587104 |
T |
|
| Q |
103 |
attttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagag |
161 |
Q |
| |
|
|||| |||||||||| || ||||| || |||||||||||||| ||||| || ||||||| |
|
|
| T |
4587103 |
atttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagag |
4587045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 4255485 - 4255528
Alignment:
| Q |
122 |
aacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4255485 |
aacaccgaatacaatcacaaacgcttgctcgaatcaagaggtcc |
4255528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 4562199 - 4562073
Alignment:
| Q |
37 |
tccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataa-ccttcgtgaacaccgagtacaa |
135 |
Q |
| |
|
|||||||||| |||||| |||||||| |||| | ||| ||||||| | |||||||| ||||| ||| |||||| |||| || ||||| || ||||| |
|
|
| T |
4562199 |
tccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaa |
4562100 |
T |
|
| Q |
136 |
tcacaaacgcttgctcaaatcaagaggt |
163 |
Q |
| |
|
||||||||| ||||| |||||||||||| |
|
|
| T |
4562099 |
tcacaaacgtttgct-aaatcaagaggt |
4562073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 4483536 - 4483569
Alignment:
| Q |
131 |
tacaatcacaaacgcttgctcaaatcaagaggtc |
164 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
4483536 |
tacaatcacaaacgtttgctcaaatcaagaggtc |
4483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 4255395 - 4255459
Alignment:
| Q |
20 |
ccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaa |
84 |
Q |
| |
|
|||||||| || |||||||||| |||| |||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
4255395 |
ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaa |
4255459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 2384 - 2214
Alignment:
| Q |
14 |
aaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataa |
113 |
Q |
| |
|
|||||||||||||| || |||||||||| |||| |||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
2384 |
aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa |
2285 |
T |
|
| Q |
114 |
ccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttc |
184 |
Q |
| |
|
|||| || ||||| || |||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
2284 |
cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttc |
2214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 24104646 - 24104484
Alignment:
| Q |
23 |
catgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcgtga |
122 |
Q |
| |
|
||||| || ||||||||| |||| |||||| |||||||| |||| ||||||||| |||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
24104646 |
catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtga |
24104547 |
T |
|
| Q |
123 |
acaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttca |
185 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
24104546 |
acaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttca |
24104484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 2021 - 2189
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
||||||||||| || ||||||||| |||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
2021 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
2120 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttc |
184 |
Q |
| |
|
|| || ||||| || |||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
2121 |
tttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttc |
2189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 1282991 - 1282819
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
|||||||||||| || |||||||||| |||| ||||| ||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
1282991 |
aaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc |
1282892 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcactg |
188 |
Q |
| |
|
|| || || || || ||||||||||||||||||||||||||||||||||| ||| | || |||||||||||| |
|
|
| T |
1282891 |
tttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactg |
1282819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 3088306 - 3088131
Alignment:
| Q |
13 |
taaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacata |
112 |
Q |
| |
|
|||||| |||||||| || |||||||||| |||| |||||| |||| |||||||| | ||||||||||| |||||||||||| ||| ||| ||||| |
|
|
| T |
3088306 |
taaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacata |
3088207 |
T |
|
| Q |
113 |
accttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcttaatggtttcactg |
188 |
Q |
| |
|
||||| || || ||||| ||||||||||| || ||||| |||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
3088206 |
acctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactg |
3088131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 20862378 - 20862514
Alignment:
| Q |
14 |
aaaaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataa |
113 |
Q |
| |
|
||||||||||||||||| || | ||||| |||| |||||| ||||||||||| | | ||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
20862378 |
aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa |
20862477 |
T |
|
| Q |
114 |
ccttcgtgaacaccgagtacaatcacaaacgcttgct |
150 |
Q |
| |
|
| || || || || || |||||||||||||||||||| |
|
|
| T |
20862478 |
catttgtcaatactgaatacaatcacaaacgcttgct |
20862514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 1676079 - 1675930
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
|||| ||||||| || || ||||||| |||| ||||| ||||||||||||| ||||||||||||| || ||||||||||||| | | | ||||| |
|
|
| T |
1676079 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1675980 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
| || ||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
1675979 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcc |
1675930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 1316 - 1167
Alignment:
| Q |
16 |
aaaaccacatgcagtattgattccatttccaattcaagaaaatatcaatccattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
115 |
Q |
| |
|
|||| ||||||| || || ||||||| |||| ||||| ||||||||||||| ||||||||||||| || ||||||||||||| | | | ||||| |
|
|
| T |
1316 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1217 |
T |
|
| Q |
116 |
ttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcc |
165 |
Q |
| |
|
| || ||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
1216 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcc |
1167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University