View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_high_6 (Length: 428)
Name: NF10910_high_6
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 3 - 411
Target Start/End: Complemental strand, 41205500 - 41205092
Alignment:
| Q |
3 |
gaagtgttgaaacaagttcttggaacagtgacgtcacgcaaagacagaaattcagtttctttagtttgcaaacagtggtacaacgctgaaagattgtcaa |
102 |
Q |
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| T |
41205500 |
gaagtgttgaaacaagttctcggaacagtgaagtcacgcaaagacagaaattcagcttctttagtttgcaaacagtggtacaacgctgaaagattgtcaa |
41205401 |
T |
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| Q |
103 |
ggaggaatgttttcataggtaactgttattctgtgactcctgagatcctgacacgtaggtttccaaacataagaagtattacactcaaagggaagccacg |
202 |
Q |
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| T |
41205400 |
ggaggaatgttttcataggtaactgttattctgtgactcctgagatcctgacacgtaggtttccaaacataagaagtattacactcaaagggaagccacg |
41205301 |
T |
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| Q |
203 |
tttctctgacttcaacttggttcctgaaaattggggtgctgatattcattcatggttggttgtttttgctgaaaagtacccatttcttgaggagttgagg |
302 |
Q |
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| T |
41205300 |
tttctctgacttcaacttggttcctgaaaattggggtgctgatattcattcatggttggttgtttttgctgaaaagtacccattccttgaggagttgagg |
41205201 |
T |
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| Q |
303 |
cttaagagaatggttgttactgatgagagtttagagtttttggctttttcttttcataatttcaaagcactttctctactgagctgtgaaggatttagca |
402 |
Q |
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| T |
41205200 |
cttaagagaatggttgttactgatgagagtttagagtttttggctttttcttttcataatttcaaagcactttctctactgagctgtgaaggatttagca |
41205101 |
T |
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| Q |
403 |
ctgatggct |
411 |
Q |
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| T |
41205100 |
ctgatggct |
41205092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 36 - 409
Target Start/End: Original strand, 36144039 - 36144412
Alignment:
| Q |
36 |
tcacgcaaagacagaaattcagtttctttagtttgcaaacagtggtacaacgctgaaagattgtcaaggaggaatgttttcataggtaactgttattctg |
135 |
Q |
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| T |
36144039 |
tcacgcaaagacagaagctcagtttcattggtatgcaaagaatggtacaacgctgaaagatggtcaaggaggaatgttttcataggtaactgttatgctg |
36144138 |
T |
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| Q |
136 |
tgactcctgagatcctgacacgtaggtttccaaacataagaagtattacactcaaagggaagccacgtttctctgacttcaacttggttcctgaaaattg |
235 |
Q |
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|| | ||||||||| |||||||||| |||||||||||||||||| ||||| | ||||| || || ||||| ||||| || ||||||||||||| |||||| |
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| T |
36144139 |
tgtcacctgagatcttgacacgtagatttccaaacataagaagtgttacaatgaaaggaaaacctcgtttttctgattttaacttggttcctgcaaattg |
36144238 |
T |
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| Q |
236 |
gggtgctgatattcattcatggttggttgtttttgctgaaaagtacccatttcttgaggagttgaggcttaagagaatggttgttactgatgagagttta |
335 |
Q |
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|||||||||||||||||||||||||||||||||||| || || || || |||||||| |||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
36144239 |
gggtgctgatattcattcatggttggttgtttttgccgataaatatccttttcttgaagagttgaggcttaagagaatggctgttagtgatgaaagtttg |
36144338 |
T |
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| Q |
336 |
gagtttttggctttttcttttcataatttcaaagcactttctctactgagctgtgaaggatttagcactgatgg |
409 |
Q |
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|||||||| ||||||||||||| |||||||||||| |||||||| |||| ||||| ||||||||||||||||| |
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| T |
36144339 |
gagtttttagctttttcttttcctaatttcaaagctctttctcttttgagttgtgatggatttagcactgatgg |
36144412 |
T |
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