View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_high_8 (Length: 374)
Name: NF10910_high_8
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 230195 - 230041
Alignment:
| Q |
19 |
cagtcctcccctccaccagctcagtccactccccctcccgttcagtcttctcctccacctgttcagcaatctcctcctccaaccccactcactcctccac |
118 |
Q |
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| T |
230195 |
cagtcatcccctccaccagctcagtccactccccctcccgttcagtcttctcctccacctgttcagcaatctcctcctccaaccccactcactcctccac |
230096 |
T |
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| Q |
119 |
ctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccatt |
173 |
Q |
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| T |
230095 |
ctgttcagtctactccaccacctgcatcaccaccccctgcctcacctccaccatt |
230041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 229925 - 229851
Alignment:
| Q |
289 |
gccaagcttaagagtaaagcccctgcattggcacctgtgctctcgccatcagatgctcccgctcccggactctct |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
229925 |
gccaagcttaagagtaaagcccctgcattggcacctgtgctctcgccatcagatgctcccgctcccggactctct |
229851 |
T |
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