View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_low_11 (Length: 333)
Name: NF10910_low_11
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 36025301 - 36025605
Alignment:
| Q |
17 |
acaattgtgtcttcagctgttcctaaatcaccacatggatagtaacaaatccaccaccaatattttgacagaaggttttcctagcctagaattgtttt-- |
114 |
Q |
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| T |
36025301 |
acaattgtgtcttcagctgttcctaaagcaccacatggatagtaacaaatccaccaccaatattttgacagaaggttttcctagcctagaattgctttca |
36025400 |
T |
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| Q |
115 |
---------------tggtggggattatctacctatgtattgtctacttcttgagtgacattttctttatctctaactttcttaattatctaaataattt |
199 |
Q |
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| T |
36025401 |
tctttgttgttttgttggtggggattatctacctatgtattgtctacttcttgagtgacattttctttatctctaactttcttaattatctaaataattt |
36025500 |
T |
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| Q |
200 |
attttaaccatcaatttatcgacaagtttctcaggtttacttccctatccttccgagtcttcgatcttaggcttctcaagctgcgttacagatgcacatg |
299 |
Q |
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| T |
36025501 |
attttaatcatcaatttatcgacaagtttctcaggtttacttccctatctttccgggtcttcgatcttcggcttctcaagttgcgttacaggtgcacatg |
36025600 |
T |
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| Q |
300 |
tcatc |
304 |
Q |
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||||| |
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| T |
36025601 |
tcatc |
36025605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 46116234 - 46116198
Alignment:
| Q |
188 |
tctaaataatttattttaaccatcaatttatcgacaa |
224 |
Q |
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| T |
46116234 |
tctaaataatttattttaaccatcaatctatctacaa |
46116198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 46129368 - 46129332
Alignment:
| Q |
188 |
tctaaataatttattttaaccatcaatttatcgacaa |
224 |
Q |
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||||||||||||||||||||||||||| |||| |||| |
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| T |
46129368 |
tctaaataatttattttaaccatcaatctatctacaa |
46129332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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