View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10910_low_15 (Length: 263)
Name: NF10910_low_15
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_15 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 32809350 - 32809602
Alignment:
| Q |
11 |
cacagaactaggtctttcattattatcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcgataagcataacaagt |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
32809350 |
cacagaactaggtttttcattattatcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcaataagcataaaaagt |
32809449 |
T |
|
| Q |
111 |
cctactacaacaagagttccaacaacaaaacctttaactacgtgaccttgacctccatccagatacagtataaggccaattgaagcatgaccgggtagaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |||||| |
|
|
| T |
32809450 |
cctactacaacaagagttccaacaacaaaacctttaactacgtgaccttgacctccatccaggtacactataaggccaatcgaagcatgaccgagtagaa |
32809549 |
T |
|
| Q |
211 |
acttcctagttatggacaaaatctcaatcctgtgaagtgctacaacagcacca |
263 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32809550 |
acttcctagttaaggacaaaatctcaatcctgtgaagtgctacaacagcacca |
32809602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 32802790 - 32802971
Alignment:
| Q |
13 |
cagaactaggtctttcattattatcattatcattgttatcaagtcgaagtctctgataagttgcattagtaaaagtagctgcgataagcataacaagtcc |
112 |
Q |
| |
|
||||| |||| | |||||||||||||||||||| || ||||||| ||||||||| |||||| ||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
32802790 |
cagaattaggcccttcattattatcattatcatcgtcatcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtcc |
32802889 |
T |
|
| Q |
113 |
tactacaacaagagttccaacaacaaaacctttaactacgtgaccttgacctccatccagatacagtataaggccaattgaa |
194 |
Q |
| |
|
||| |||||||||||||||||||| ||||| ||| || || || ||||||||| |||| |||| | |||| ||| ||||| |
|
|
| T |
32802890 |
aactgcaacaagagttccaacaacacaacctccaacaacctggccctgacctccagccaggtacactgtaagaccagttgaa |
32802971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University