View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_low_16 (Length: 241)
Name: NF10910_low_16
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_16 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6522209 - 6522434
Alignment:
| Q |
1 |
ccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatatat |
100 |
Q |
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| T |
6522209 |
ccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtatttatggtggtttttgtatgtgtttttactatatctttgatatat |
6522308 |
T |
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| Q |
101 |
taaatatttaatgtctcactatgtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgttgatgatgatttta |
200 |
Q |
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| T |
6522309 |
taaatatttaatgtctcac--tgtgttaattctggtttttgcagataagggcaacacgtcaagaaatgtcgtccctgtaattttgttgatgttgatttta |
6522406 |
T |
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| Q |
201 |
ttgtgttcattgttatcatctttttgat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6522407 |
ttgtgttcattgttatcatctttttgat |
6522434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6506496 - 6506438
Alignment:
| Q |
1 |
ccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
59 |
Q |
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||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
6506496 |
ccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
6506438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 521 - 463
Alignment:
| Q |
1 |
ccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
59 |
Q |
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| T |
521 |
ccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8174 - 8116
Alignment:
| Q |
1 |
ccatctttctcaactcctcctccgtttgcacaaaacaatacttcctctcaaggtattta |
59 |
Q |
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||||| |||||| |||||||||| |||||| |||||| ||||||||||| ||||||||| |
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| T |
8174 |
ccatcattctcagctcctcctccatttgcagaaaacactacttcctctccaggtattta |
8116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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