View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10910_low_2 (Length: 582)

Name: NF10910_low_2
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10910_low_2
NF10910_low_2
[»] chr7 (2 HSPs)
chr7 (32-563)||(7165516-7166054)
chr7 (311-474)||(31822207-31822369)
[»] scaffold0311 (3 HSPs)
scaffold0311 (311-474)||(13462-13623)
scaffold0311 (309-427)||(15088-15203)
scaffold0311 (465-518)||(15022-15075)
[»] chr4 (1 HSPs)
chr4 (311-474)||(27737832-27737994)
[»] chr6 (3 HSPs)
chr6 (400-480)||(20985916-20985996)
chr6 (411-474)||(8915517-8915580)
chr6 (322-376)||(30372040-30372093)
[»] chr2 (2 HSPs)
chr2 (432-474)||(18776813-18776855)
chr2 (465-503)||(18776764-18776802)
[»] chr3 (2 HSPs)
chr3 (465-527)||(36472289-36472351)
chr3 (392-429)||(36472548-36472585)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 32 - 563
Target Start/End: Complemental strand, 7166054 - 7165516
Alignment:
Q  32 ttttgttcacaaaaatagtcttattacaattgtaataagatataacttgaccaaaaaatagtccacgtgaccatagttatgttcatacatttaaagggtg 131  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |    ||    
T  7166054 ttttgttcacaaaagtagtcttattacaattgtaataagataaaacttgaccaaaaaatagtccacgtgaccatagttatgttcatacatcgtat---tg 7165958  T
Q  132 aatatgcaatggttgggttcaaactctgaattccctatttatttattttaaaggatgaaattttagttactaa---gttacttgatnnnnnnnnnnnnct 228  Q
     |||||||| |||  |||| |||||||||||| |||||||||| |||||||| | |||| ||||||| |||||   ||||||||||            ||    
T  7165957 tatatgcaagggtcaggtttaaactctgaatttcctatttattcattttaaaaggtgaatttttagtcactaataagttacttgataaaaagaaaa--ct 7165860  T
Q  229 taaacttgtgtatttcataagagcaagtttccaatgacctctacctcttacacacatttcaagattgatattgtatggtttttgttgagtatttgagaat 328  Q
    ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7165859 taaccctgtgtatttcataagagcaagtttccaatgacctccacctcttacacacatttcaagattgatattgtatgatttttgttgagtaattgagaat 7165760  T
Q  329 tcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagatagaaaatgagtacatactagt 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  7165759 tcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattaacaagagaaatattttgatcaaaagatagaaaatgagtacatactagt 7165660  T
Q  429 ccatatttataggacttattggactaaccaattgtgtaactaactt---------gtaactaactattaactatttctaattaagccactaaatgctaaa 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||| ||||||||||||||||||||||||||    
T  7165659 ccatatttataggacttattggactaaccaattgtgtaactaacttcaaactccactaactaactattaactaattctaattaagccactaaatgctaaa 7165560  T
Q  520 aaccttaatagtttccgtctagagagatttaacaatgaacgtaa 563  Q
    || |||||||||||||| ||||||||||||||| ||||||||||    
T  7165559 aatcttaatagtttccgcctagagagatttaaccatgaacgtaa 7165516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 311 - 474
Target Start/End: Original strand, 31822207 - 31822369
Alignment:
Q  311 tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatca-agagaaatattttgattaaaagatag 409  Q
    |||||||| | |||||||| |||||||||| |  ||||||||||| || | ||||||| ||||||||  |||| ||| ||| |||||||| |||||||||    
T  31822207 tgttgagtttatgagaatttggagaattag-agccaaaagagccataatggtttgattgagaaaagaa-atcatagaaaaacattttgatcaaaagatag 31822304  T
Q  410 aaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt 474  Q
    |||||||||||||||| |||||||||||||||||| ||  |||||||||||||||||||||||||    
T  31822305 aaaatgagtacatacttgtccatatttataggactaatcagactaaccaattgtgtaactaactt 31822369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 311 - 474
Target Start/End: Complemental strand, 13623 - 13462
Alignment:
Q  311 tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagataga 410  Q
    ||||||||| ||| |||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||   |||||||||||||||| ||||||||||    
T  13623 tgttgagtaattgcgaattcggagaattagaaacaaaaagagccaaaaggctttgattgagaaaagattac--agagaaatattttgatcaaaagataga 13526  T
Q  411 aaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt 474  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  13525 aaatgagtacatactagtccatatttataggactaattagactaaccaattgtgtaactaactt 13462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 309 - 427
Target Start/End: Complemental strand, 15203 - 15088
Alignment:
Q  309 tttgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagata 408  Q
    ||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||||||| | |||||||||   |||||||||||||||| ||||||||    
T  15203 tttgttgagtaattgagaattcggagaattagaaacaaaaagagccaaaaggctttgattga-aaaagatta--cagagaaatattttgatcaaaagata 15107  T
Q  409 gaaaatgagtacatactag 427  Q
    |||||||||||||||||||    
T  15106 gaaaatgagtacatactag 15088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 15075 - 15022
Alignment:
Q  465 taactaacttgtaactaactattaactatttctaattaagccactaaatgctaa 518  Q
    ||||||||||||||||||||||||||||   ||||||||  |||||||| ||||    
T  15075 taactaacttgtaactaactattaactaaccctaattaacacactaaatcctaa 15022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 311 - 474
Target Start/End: Complemental strand, 27737994 - 27737832
Alignment:
Q  311 tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatca-agagaaatattttgattaaaagatag 409  Q
    |||||||| |||||||||| |||||||||| |  ||| ||||||| |||||||||||| |||||||   |||  ||| ||| |||||||| |||||||||    
T  27737994 tgttgagtttttgagaatttggagaattag-agccaatagagccataaggctttgattgagaaaagga-atcgtagaaaaacattttgatcaaaagatag 27737897  T
Q  410 aaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt 474  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27737896 aaaatgagtacatactagtccttatttataggacttattggactaaccaattgtgtaactaactt 27737832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 20985916 - 20985996
Alignment:
Q  400 taaaagatagaaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaacttgtaact 480  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||    
T  20985916 taaaagatagcaaatgagtacatactagtccatatttataggacttaatggactaacaaactgtgtaactaacttctaact 20985996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 8915580 - 8915517
Alignment:
Q  411 aaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt 474  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||||||||| ||| ||||||    
T  8915580 aaatgagtacataatagtccttatttataggacttaatggactaaccaattgtttaattaactt 8915517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 376
Target Start/End: Complemental strand, 30372093 - 30372040
Alignment:
Q  322 tgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaag 376  Q
    ||||||||  ||||||| |||||||||||||||| |||||||||||| |||||||    
T  30372093 tgagaatttagagaatt-ggaaacaaaagagccataaggctttgattgagaaaag 30372040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 474
Target Start/End: Complemental strand, 18776855 - 18776813
Alignment:
Q  432 tatttataggacttattggactaaccaattgtgtaactaactt 474  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  18776855 tatttataggacttaatggactaaccaattgtgtaactaactt 18776813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 503
Target Start/End: Complemental strand, 18776802 - 18776764
Alignment:
Q  465 taactaacttgtaactaactattaactatttctaattaa 503  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  18776802 taactaacttgtaactaactattaactaatcctaattaa 18776764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 527
Target Start/End: Complemental strand, 36472351 - 36472289
Alignment:
Q  465 taactaacttgtaactaactattaactatttctaattaagccactaaatgctaaaaaccttaa 527  Q
    ||||||||||||||||||||||||||||  |||||||||  |||||||| |||| || |||||    
T  36472351 taactaacttgtaactaactattaactaactctaattaacacactaaatcctaagaatcttaa 36472289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 36472585 - 36472548
Alignment:
Q  392 attttgattaaaagatagaaaatgagtacatactagtc 429  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  36472585 attttgatcaaaagatggaaaatgagtacatactagtc 36472548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University