View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_low_3 (Length: 517)
Name: NF10910_low_3
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 2 - 502
Target Start/End: Complemental strand, 565033 - 564535
Alignment:
| Q |
2 |
aattaattgtagtgtatattatatactatcaaggagtgtaaattactcttgtttacactatcatatgtacaacatgacaactagccgtttgttttgttct |
101 |
Q |
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| T |
565033 |
aattaatggtattgtatattatatactatcatggagtgtaaattactcttgtttacactatcatatgtacaacatgacaactagccgtttgtt--gttct |
564936 |
T |
|
| Q |
102 |
tgtcttaattatcctatttaattaaccaaatcaaccttccattaacacagatcagagcctaaactaatcaaatttccatggaaagaaaaacacacattgc |
201 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564935 |
tgtcttaattatcttatttaattaaccaaatcaaccttccattaacacggatcagagcctaaactaatcaaatttccatggaaagaaaaacacacattgc |
564836 |
T |
|
| Q |
202 |
tgtggtttcagtccccattgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcaccttaatc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564835 |
tgtggtttcagtccccattgtgagtcatcaaatagcaatttctgagttcatcaagaaactccttaatcttcatcctaacaagtttcacatcaccttaatc |
564736 |
T |
|
| Q |
302 |
attccagtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctcaatgtagataccattgttcttccaccaatcaacttgc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564735 |
attccagtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctcaatgtagataccattgttcttccaccaatcaacttgc |
564636 |
T |
|
| Q |
402 |
caccacaaactgtccctacactcaaacttcctctttcaatgtctctaactatgccatctatcattgatgcattgaaaacaaaaacatcaaaactagttgc |
501 |
Q |
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| T |
564635 |
caccacaaactgtccctacactcaaacttcctctttcaatgtctctaactatgccatatatcattgatgcattgaaaacaaaaacatcaaaactagttgc |
564536 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 874194 - 874139
Alignment:
| Q |
159 |
cctaaactaatcaaatttccatggaaagaaaaacacacattgctgtggtttcagtc |
214 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||| |
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| T |
874194 |
cctaaactaatcaaatttccatggatagaaaaacattcattgctttggtttaagtc |
874139 |
T |
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