View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_low_4 (Length: 506)
Name: NF10910_low_4
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 33633025 - 33632538
Alignment:
| Q |
1 |
accttgttcagacatagtatgataattgcgatgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633025 |
accttgttcagacatagtatgataattgtgatgctactttttcttttttgcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatc |
33632926 |
T |
|
| Q |
101 |
attcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaaccaggggttgcaatttcttcacttataaaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33632925 |
attcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaacaaggggttgcaatttcttcacttataaaacca |
33632826 |
T |
|
| Q |
201 |
tagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632825 |
tagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaa |
33632726 |
T |
|
| Q |
301 |
atttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactggaaggat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33632725 |
atttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtaattggttagattttgttggagtactggaaggat |
33632626 |
T |
|
| Q |
401 |
gtgaatctgatatattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632625 |
gtgaatctgatatattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttc |
33632538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 488
Target Start/End: Original strand, 29192932 - 29193408
Alignment:
| Q |
2 |
ccttgttcagacatagtatgataattgcgatgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatca |
101 |
Q |
| |
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|||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29192932 |
ccttattcagacatattatgataattgtgatgctactttt-ctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatca |
29193030 |
T |
|
| Q |
102 |
ttcattggtgctttgaaggtaaaagatgcttatcatagtaa--taaatcacaactaaaaactatagaaccaggggttgcaatttcttcacttataaaacc |
199 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||| ||||||| || | |||||||||||| |
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| T |
29193031 |
ttcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaaa----tagaaccagcggttgcacttgc---acttataaaacc |
29193123 |
T |
|
| Q |
200 |
atagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcaga |
299 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
29193124 |
atagtctttgcttgttgattttttctgattgtgttccttcccaggagatcctgaaagatgacaaggagccggaacctttaaatattgactttggttcaga |
29193223 |
T |
|
| Q |
300 |
aatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttgttggagtactggaagga |
399 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
29193224 |
aatttcgtctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaag----ttgtcattggttagattttgttggagtaatgggagga |
29193319 |
T |
|
| Q |
400 |
tgtgaatctgatatattgaacatttatttaattgtcattcagtttctatttttcatacattaccattcactgacctgttttctgttttc |
488 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
29193320 |
tgtgaatatgatatattgaccatttatttaattgtcattcagtttctattttttatacactaccattcactgacctgttttctgttttc |
29193408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 29182893 - 29183063
Alignment:
| Q |
60 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagt--aataaatcacaactaaa |
157 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
29182893 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaa |
29182992 |
T |
|
| Q |
158 |
aactatagaaccaggggttgcaatttc---------ttcacttataaaaccatagtatttgcttgttgatttttt |
223 |
Q |
| |
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|||||||||| ||||||| || | | |||||||||||||||||| |||||||||||||||||| |
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| T |
29182993 |
----atagaaccagcggttgcacttgcacttgcacttgcacttataaaaccatagtctttgcttgttgatttttt |
29183063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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