View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_low_6 (Length: 430)
Name: NF10910_low_6
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 43928408 - 43927993
Alignment:
| Q |
1 |
aggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttannnnnnnatataacttttctttaatatgttt |
100 |
Q |
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| T |
43928408 |
aggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttattttt--atataacttttctttaatatgttt |
43928311 |
T |
|
| Q |
101 |
tgatttcaatccttgttcttgttttacatttccttctggtttttatctccgcttcatatctctctcttggtttggtgctcattgttgttaaggtatttct |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43928310 |
tgatttcaatccttcttcttgttttacatttccttctggtttttatctccgcttcatatttctctcttggtttggtgctcattgttgttaaggtatttct |
43928211 |
T |
|
| Q |
201 |
tctcatatatttattttctttcaatccattgtcttctattcaatgcatccaatcccaatatcagaaaatggcaatttggaacatatatttaatgatttgc |
300 |
Q |
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| T |
43928210 |
tctcatatatttattttctttcaatccattgtcttctattc-atgcatccaatcccaatatcagaaaatggcaatttggaacatatatttaatgattttc |
43928112 |
T |
|
| Q |
301 |
tta-------tgtatttatttttgttacatcattggttatgcatgtgttttttaattaatcatgaacaacttgttcatattgttcattgtcnnnnnnngt |
393 |
Q |
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||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43928111 |
ttatctttcgtctatttatttttgttaaatcattggttatgcatgtgttttttaattaatcatgaacaacttgttcatattgttcattgtcaaaaaaagt |
43928012 |
T |
|
| Q |
394 |
tattgtaacatgcaattct |
412 |
Q |
| |
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||||||||||||||||||| |
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| T |
43928011 |
tattgtaacatgcaattct |
43927993 |
T |
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