View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_low_8 (Length: 425)
Name: NF10910_low_8
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 35517782 - 35518184
Alignment:
| Q |
18 |
attaaaagaaaaacttataactctatcagcagcacaaaacaagagagtttggtgcacatatatatcagtggttcaaaattctcccctataactctatctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35517782 |
attaaaagaaaaacttataactctatcagcagcacaaaacaagagagtttggtgcacatatatatcagtggttcaaaattctcccctataactctatctt |
35517881 |
T |
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| Q |
118 |
caatcgtggatgaggccaaaactgcaccttacagcggccatcgtggcagttttcatgactgcatggttagcatacaaccgtggagtaacaccatccaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35517882 |
caatcgtggatgaggccaaaactgcaccttacggcggccatcgtggcagttttcatgactgcatggttagcatacaaccgtggagtaacaccatccaagg |
35517981 |
T |
|
| Q |
218 |
atgtcacagaaacatcaaccttcggagtttctgatgtttggcaatacgagagtatggttccgattgataacggtgccgttggaccggagagtcttgcctt |
317 |
Q |
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| T |
35517982 |
atgtcacagaaacatcagccttcggagtttccgatgtttggcaatacgagagtatggttccgattgataacgatgccgttggaccggagagtcttgcctt |
35518081 |
T |
|
| Q |
318 |
cgatcctaacggtgaaggaccttataccggcatttccaatggacacatcatcaaatggcaccgtcatgagaaccgttgggtggactttgccgtctctgct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
35518082 |
cgatcctaacggtgaaggaccttataccggcatttccaatggacacatcatcaaatggcaccgtcatgagaaccgttgggtggactttgccgtcacttct |
35518181 |
T |
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| Q |
418 |
tct |
420 |
Q |
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| T |
35518182 |
tct |
35518184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 41 - 424
Target Start/End: Original strand, 35523407 - 35523786
Alignment:
| Q |
41 |
tatcagcagcacaaaacaagagagtttggtgcacatatatatcagtggttcaaaattctcccctataactctatcttcaatcgtggatgaggccaaaact |
140 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||| |||| | ||||||||| |||| |
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| T |
35523407 |
tatcagcagcacaaaacaagagagtttggtgcaca-atatacc--tggttcaatattctcccctataactctatcttcgatcg-gcatgaggccacaact |
35523502 |
T |
|
| Q |
141 |
gcaccttacagcggccatcgtggcagttttcatgactgcatggttagcatacaaccgtggagtaacaccatccaaggatgtcacagaaacatcaaccttc |
240 |
Q |
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||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
35523503 |
gcaccttacggctgccgtcgtggcagttttcatgactgcatggttagcatacagccgtggagtaactccatccaaggatgtcacaaaaacatcaaccttc |
35523602 |
T |
|
| Q |
241 |
ggagtttctgatgtttggcaatacgagagtatggttccgattgataacggtgccgttggaccggagagtcttgccttcgatcctaacggtgaaggacctt |
340 |
Q |
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||||||| |||| ||||||||||||| || | |||||||||| |||| |||||||||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
35523603 |
ggagttttcaatgtatggcaatacgagaataagcttccgattgaatacggcgccgttggaccggagagtttcgccttcgatcctcacggtgaaggacctt |
35523702 |
T |
|
| Q |
341 |
ataccggcatttccaatggacacatcatcaaatggcaccgtcatgagaaccgttgggtggactttgccgtctctgcttctccac |
424 |
Q |
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|||| || ||||| |||||||||||||||||||||||| |||| | |||||||||| ||||||||||||| || ||||||||| |
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| T |
35523703 |
atactggagtttccgatggacacatcatcaaatggcaccatcatcaaaaccgttgggaggactttgccgtcacttcttctccac |
35523786 |
T |
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