View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10910_low_9 (Length: 379)
Name: NF10910_low_9
Description: NF10910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10910_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 42529911 - 42529533
Alignment:
| Q |
1 |
agtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcattaatg |
100 |
Q |
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| T |
42529911 |
agtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcaataatg |
42529812 |
T |
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| Q |
101 |
aaacccctataaattagctggaataatagctgcgagtagcagaatatataatcaaaagaaatgtctaatcagttaattcatatcatttaggggtgtgggg |
200 |
Q |
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| T |
42529811 |
aaacccctataaattagctggaataatagctgcaagtagcagaatatataatcgaaagaaatgtctaatcagttaattcatatcatttaggggtgtgggg |
42529712 |
T |
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| Q |
201 |
aagtgatgttaatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaaa |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529711 |
aagtgatgttgatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaaa |
42529612 |
T |
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| Q |
301 |
tactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctggaggtttga |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42529611 |
tactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctagaggtttga |
42529533 |
T |
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