View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10911_high_3 (Length: 511)
Name: NF10911_high_3
Description: NF10911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10911_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Original strand, 3526971 - 3527454
Alignment:
| Q |
14 |
gaagaggattttacctgggggctgcaatgacgacaggggaagagttggagaagaagctgaaaatttccaattacgaaatatcaggatataaatgcatgga |
113 |
Q |
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| T |
3526971 |
gaagaggattttacctgggggctgcaatgacgacaggggaagagttggagaagaagctgaaaatttccaataaggaaatatcaggatataaatgcatgta |
3527070 |
T |
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| Q |
114 |
ttgatgtaatctcattattattataaattgaattgatgaaagtagtgtactta----tatggtagaattggaaaataaaaaagtaatat-cctctaaaaa |
208 |
Q |
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| T |
3527071 |
ttgatgtaatctcattattattataaattgaattgatgaaagtagtgtacttaattatatggtagaattggaaaataaaaaagtaatattcctctaaaaa |
3527170 |
T |
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| Q |
209 |
tcaaannnnnnnncttcttcaatgggtcagtcgatttaggacggaagaagtattaaatatgttttcatttcacatacctatgcaggagctggtattgaag |
308 |
Q |
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| T |
3527171 |
tcaatttttttt--ttcttcaatgggtcagtcgatttaggacggaagaagtattaaatatgttttcatttcacatacctatgcaggagctggtattgaag |
3527268 |
T |
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| Q |
309 |
ttgataccacataagtatataacttggaaaacctgagtaattttcaaaccaaaagcttcaaataagccataagctgcgataagttgacagaaacatgttt |
408 |
Q |
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| T |
3527269 |
ttgataccacataagtatataacttggaaaacctgagtaattttcaaaccaaaagcttcaaataagccataagctgcgataagttgacagaaacatgttt |
3527368 |
T |
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| Q |
409 |
tgtgggttgcatatagatctttaattggattgcagcaaatgtctggtggttgtgtagagttaacgtagtcaatgcatggtaatagt |
494 |
Q |
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| T |
3527369 |
tgtgggttgcatatagatctttaattggattgcagcaaatgtctggtggttgtgtagagttaatgtagtcaatgcatggtaatagt |
3527454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 457
Target Start/End: Original strand, 3536979 - 3537010
Alignment:
| Q |
426 |
tctttaattggattgcagcaaatgtctggtgg |
457 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3536979 |
tctttaattggattgcagcaaatgtctggtgg |
3537010 |
T |
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