View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10911_low_1 (Length: 975)

Name: NF10911_low_1
Description: NF10911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10911_low_1
NF10911_low_1
[»] chr8 (4 HSPs)
chr8 (1-963)||(43052593-43053565)
chr8 (784-843)||(2235643-2235702)
chr8 (753-812)||(5227528-5227587)
chr8 (748-821)||(8062317-8062390)
[»] chr1 (11 HSPs)
chr1 (745-843)||(10199395-10199493)
chr1 (748-829)||(34290224-34290305)
chr1 (745-843)||(4576790-4576888)
chr1 (745-843)||(7136985-7137083)
chr1 (745-823)||(45975675-45975753)
chr1 (753-821)||(5592694-5592762)
chr1 (788-843)||(25479609-25479664)
chr1 (742-828)||(38578509-38578596)
chr1 (763-821)||(16322852-16322910)
chr1 (752-817)||(4700079-4700144)
chr1 (742-803)||(33546480-33546541)
[»] chr7 (6 HSPs)
chr7 (459-566)||(30428223-30428330)
chr7 (332-400)||(30428401-30428470)
chr7 (747-843)||(752956-753052)
chr7 (735-807)||(39907778-39907850)
chr7 (742-811)||(12110342-12110411)
chr7 (742-811)||(43694589-43694658)
[»] chr2 (5 HSPs)
chr2 (742-829)||(39236496-39236583)
chr2 (789-843)||(43717123-43717177)
chr2 (742-811)||(1899923-1899992)
chr2 (753-821)||(7103491-7103560)
chr2 (742-823)||(12313180-12313261)
[»] chr5 (2 HSPs)
chr5 (763-843)||(17258870-17258950)
chr5 (747-823)||(41981872-41981948)
[»] chr4 (3 HSPs)
chr4 (742-807)||(3155585-3155650)
chr4 (742-823)||(25332756-25332838)
chr4 (742-807)||(53294137-53294202)
[»] chr3 (5 HSPs)
chr3 (789-833)||(24785290-24785334)
chr3 (748-807)||(30443881-30443940)
chr3 (756-843)||(40122740-40122827)
chr3 (788-838)||(24785233-24785283)
chr3 (747-824)||(28622005-28622082)
[»] scaffold0091 (1 HSPs)
scaffold0091 (753-812)||(6945-7004)
[»] chr6 (2 HSPs)
chr6 (748-823)||(9109258-9109333)
chr6 (792-823)||(33737774-33737805)


Alignment Details
Target: chr8 (Bit Score: 802; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 802; E-Value: 0
Query Start/End: Original strand, 1 - 963
Target Start/End: Complemental strand, 43053565 - 43052593
Alignment:
Q  1 tgtgttgaaagaatatttttga-tggtggatgtttcagacacttggttgcggcatcttgatccaggtgaaggtcatacagttaagggagtttatcactaa 99  Q
    |||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43053565 tgtgttgaaagactattttttagtggtggatgtttcagacacttggttgcggcatcttgatccaggtgaaggtcatacagttaagggagtttatcactaa 43053466  T
Q  100 ttaactcatgtagttgaagcgattcctttggagaacaaggagattatcttgaacaaaatgattccgttgaaaacatct--gtttgtttcgaggtcatttc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||    
T  43053465 ttaactcatgtagttgaagcgattcctttggagaacaaggagattatcttgaacgaaatgattccattgaaaacatctttgtttgtttcgaggtcatttc 43053366  T
Q  198 tcaaaatgttgtcagtgaaggataatttgattcgttggggcatgactcatttggcttcttcactttgcttaggtggttgtagaaatgatgaaacatctaa 297  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43053365 tcaaaatgttgtcagtgaagggtaatttgattcgttggggcatgactcatttggcttcttcactttgcttaggtggttgtagaaatgatgaaacatctaa 43053266  T
Q  298 ttattcgtcactttgcataggtggttctggagataaatcttaaagtggctaggtgtctatagtgttttgttatcgatgctcaggttcatgcgtttcaatt 397  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43053265 ttattcgtcactttgcataggtggttctggaaataaatcttaaagtggctaggtatctatagtgttttgttatcgatgctcaggttcatgcgtttcaatt 43053166  T
Q  398 ttgtagcaaatagcagttggacattgtttacaagctattttagtggcttgttgtgggattgtatggaaagaaagaaataataaggtgttcgatgagaagg 497  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  43053165 ttgtagcaaatagcagttggacattgtttacaagc---------agcttgttgtgggattgcatggaaagaaagaaacaataaggtgttcgatgagaagg 43053075  T
Q  498 agataactgtcgtgtttttgtttgataaagttaaaattcttatttggtggtggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43053074 agataactgtcgtgtttttgtttgataaagttaaaattcttatttggtggtggttgaaggttaagaaaaaaggtttcacctttgatatgaatcattggtg 43052975  T
Q  598 gaataatctcatgtcttgtttagggattaggattacttgatgtgattgttgttgattttagtttgttatatttga-------------------gagtgc 678  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||                   ||||||    
T  43052974 gaataatctcatgtcttgtttagggattaggattaattgatgtg---cttgttgattttagtttgttatatttgagactcttttgtcatgctttgagtgc 43052878  T
Q  679 gcttttccaatttaagcactgtgttatttcatgatatatcttttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttttataaa 778  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052877 gcttttccaatttaagcactgtgttattttatgatatatcttttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttttataaa 43052778  T
Q  779 ctagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcacattcctttactttaagtcattacaagactgacct 878  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052777 ctagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcacattcctttactttaagtcattacaagactgacct 43052678  T
Q  879 acattgtcaagttgttagtgtttttcactaaaatgcccatacccacctggaaacccataactctctcaagacctttgatgtccat 963  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43052677 acattgtcaagttgttagtgtttttcactaaaatgcccatacccacctggaaacccataactctctcaagaccttttatgtccat 43052593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 784 - 843
Target Start/End: Complemental strand, 2235702 - 2235643
Alignment:
Q  784 ttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    |||||||||||||| |||| |||||||| | ||||||||| ||||| |||||||||||||    
T  2235702 ttaaagagcttatggaaatgagctaaaaacgacttatgaacatgtcataaactattttca 2235643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 812
Target Start/End: Original strand, 5227528 - 5227587
Alignment:
Q  753 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 812  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  5227528 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 5227587  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 821
Target Start/End: Original strand, 8062317 - 8062390
Alignment:
Q  748 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 821  Q
    |||||||||||||| |||||||||| |||| |||  ||| |||| ||||| ||||||||| ||| || ||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatg 8062390  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 745 - 843
Target Start/End: Complemental strand, 10199493 - 10199395
Alignment:
Q  745 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    |||||| |||||| | | ||||| |||| |||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||||    
T  10199493 tattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttca 10199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 748 - 829
Target Start/End: Original strand, 34290224 - 34290305
Alignment:
Q  748 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 829  Q
    |||||||||||||| |||||||||| |||| |||  || |||| |||||||||||||||| ||| ||||||||||| |||||    
T  34290224 ttttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtc 34290305  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 745 - 843
Target Start/End: Original strand, 4576790 - 4576888
Alignment:
Q  745 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    |||||||||| ||| || |||||||||| |||| |||  || || | |||||||||||||||| ||  |||||||| || ||||| |||||||||||||    
T  4576790 tatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttataaacatgtcataaactattttca 4576888  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 745 - 843
Target Start/End: Complemental strand, 7137083 - 7136985
Alignment:
Q  745 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    ||||||||||||| ||| |||||||||| |||| |||  ||  ||| |||||||||||||||| |||  |||||||||| ||||| ||| | |||||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttca 7136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 745 - 823
Target Start/End: Original strand, 45975675 - 45975753
Alignment:
Q  745 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 823  Q
    |||||||||||||||||||||||||||| |||| |||  ||  |||  ||||||||||||||| ||| || ||||||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaa 45975753  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 753 - 821
Target Start/End: Complemental strand, 5592762 - 5592694
Alignment:
Q  753 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 821  Q
    ||||||||| ||| |||||| |||| ||||| | |||||||||||||||||||||  || |||||||||    
T  5592762 tataagctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaaacaacttatg 5592694  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 843
Target Start/End: Original strand, 25479609 - 25479664
Alignment:
Q  788 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||| ||| |||||||||    
T  25479609 agagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttca 25479664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 828
Target Start/End: Original strand, 38578509 - 38578596
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatg-aaaataagctaaaaccaacttatgaagatgt 828  Q
    |||||||||||||||||||| ||| |||||  |||||||| |   ||||| ||||| |||||||||| ||| ||||||||||| ||||    
T  38578509 aattatttttgtataagctataagttgtttacataaactattgagaagagtttatgaaaaataagctcaaaacaacttatgaatatgt 38578596  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 763 - 821
Target Start/End: Original strand, 16322852 - 16322910
Alignment:
Q  763 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 821  Q
    |||||||||| |||  ||| ||| ||||||||||| ||||||||||||| |||||||||    
T  16322852 aagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 817
Target Start/End: Complemental strand, 4700144 - 4700079
Alignment:
Q  752 gtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaact 817  Q
    |||||||||| || ||||||||||||||||   |  |||||||||||||||||||| ||| |||||    
T  4700144 gtataagctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 803
Target Start/End: Complemental strand, 33546541 - 33546480
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaata 803  Q
    |||| |||||||||| |||  ||| ||||||||||| |||| || |||||||||||||||||    
T  33546541 aattctttttgtatatgctctaagttgtttttataagctagattgaagagcttatgaaaata 33546480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 459 - 566
Target Start/End: Complemental strand, 30428330 - 30428223
Alignment:
Q  459 tatggaaagaaagaaataataaggtgttcgatgagaaggagataactgtcgtgtttttgtttgataaagttaaaattcttatttggtggtggttgaaggt 558  Q
    |||| ||||||| |||||| | |||||||||| |||||||||| ||  | |  |||||  ||||||| ||||| |||||| ||||||||||||||| |||    
T  30428330 tatgaaaagaaataaataacagggtgttcgatcagaaggagatgacaattgcattttttcttgataatgttaacattcttgtttggtggtggttgatggt 30428231  T
Q  559 taagaaaa 566  Q
    ||||||||    
T  30428230 taagaaaa 30428223  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 30428470 - 30428401
Alignment:
Q  332 aaatcttaaagtggctaggtgtctatagtgttttgt-tatcgatgctcaggttcatgcgtttcaattttg 400  Q
    |||||||||||||||||||||||  ||||||||||| |||| |||||||| |||| ||||| ||||||||    
T  30428470 aaatcttaaagtggctaggtgtccctagtgttttgtctatcaatgctcagattcacgcgttccaattttg 30428401  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 747 - 843
Target Start/End: Original strand, 752956 - 753052
Alignment:
Q  747 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    ||||||||||||||| |||||||||| ||||||||  ||   |||| ||||||||| |||||||| || |||||  | ||||| |||||| ||||||    
T  752956 tttttgtataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttattgatatgtcataaactgttttca 753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 735 - 807
Target Start/End: Original strand, 39907778 - 39907850
Alignment:
Q  735 aaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 807  Q
    |||||| |||| ||||||||||||||| || ||||||| ||||||||  ||| ||| || |||||||||||||    
T  39907778 aaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagct 39907850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 811
Target Start/End: Original strand, 12110342 - 12110411
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 811  Q
    |||| |||| |||||||||| |||||||||| |||| |||  || |||| ||||||||||||| ||||||    
T  12110342 aattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaa 12110411  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 811
Target Start/End: Complemental strand, 43694658 - 43694589
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 811  Q
    |||| |||||||||| |||| ||||||||||||||| |||  |  |||| ||||||||||||||| ||||    
T  43694658 aattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaaaataagcaaaaa 43694589  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 742 - 829
Target Start/End: Complemental strand, 39236583 - 39236496
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 829  Q
    |||||||||| ||||| | | ||| |||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  39236583 aattatttttatataaacaataagttgttttaataaactatcttaaaaagcttataaaaataagctaaaaacaacttatgaatatgtc 39236496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 789 - 843
Target Start/End: Complemental strand, 43717177 - 43717123
Alignment:
Q  789 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||| || ||||||    
T  43717177 gagcttatgaaaataagctgaaaacaacctatgaaaatgtcctaagctgttttca 43717123  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 811
Target Start/End: Original strand, 1899923 - 1899992
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 811  Q
    |||| |||| |||||||||| ||  |||||| |||||||| | ||||||| |||| ||||||||||||||    
T  1899923 aattgttttcgtataagctataaaatgttttcataaactattctaaagagtttataaaaataagctaaaa 1899992  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 821
Target Start/End: Complemental strand, 7103560 - 7103491
Alignment:
Q  753 tataagctacaagctgttttt-ataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 821  Q
    ||||||||| ||||||||||| |||| |||  ||| |||| || |||||||||||||||| |||||||||    
T  7103560 tataagctataagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaaacaacttatg 7103491  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 823
Target Start/End: Complemental strand, 12313261 - 12313180
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 823  Q
    |||||||||||| ||||||||||  |||||  |||| |||  ||  |||||||||||||||||| | ||| |||||||||||    
T  12313261 aattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaa 12313180  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 763 - 843
Target Start/End: Complemental strand, 17258950 - 17258870
Alignment:
Q  763 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    |||||||||| ||||||||   | ||||||||||||||||||||| ||| || |||||||| ||||| ||| |||||||||    
T  17258950 aagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttca 17258870  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 747 - 823
Target Start/End: Complemental strand, 41981948 - 41981872
Alignment:
Q  747 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 823  Q
    ||||||||||| ||| |||||||||| |||||||| |||  ||| |||| ||||||||||||||| || ||||||||    
T  41981948 tttttgtataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatgaa 41981872  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 742 - 807
Target Start/End: Original strand, 3155585 - 3155650
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 807  Q
    |||| |||||||| ||||||||||||||||| ||||||||  || |||| || |||||||||||||    
T  3155585 aattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataagct 3155650  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 742 - 823
Target Start/End: Original strand, 25332756 - 25332838
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaa-agagcttatgaaaataagctaaaaccaacttatgaa 823  Q
    |||| ||||||||||||||  ||||| ||||||||| |||  |||  ||| |||||||||||||||| ||| |||||||||||    
T  25332756 aattgtttttgtataagctctaagctatttttataagctatcttatcagaacttatgaaaataagctgaaaacaacttatgaa 25332838  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 807
Target Start/End: Complemental strand, 53294202 - 53294137
Alignment:
Q  742 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 807  Q
    |||| |||||||||| |||| ||| |||||||||||||||  ||| ||| |||||||||| |||||    
T  53294202 aattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagct 53294137  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 789 - 833
Target Start/End: Original strand, 24785290 - 24785334
Alignment:
Q  789 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaa 833  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||    
T  24785290 gagcttatgaaaataaactaaaaacaacttatgaaaatgtcctaa 24785334  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 807
Target Start/End: Original strand, 30443881 - 30443940
Alignment:
Q  748 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 807  Q
    ||||||||| |||| |||||||||||||||||||  ||  ||| ||||||||||||||||    
T  30443881 ttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagct 30443940  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 843
Target Start/End: Complemental strand, 40122827 - 40122740
Alignment:
Q  756 aagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 843  Q
    |||||| ||| ||||||||||| |||   |||| || | ||| ||||||||||||| ||||||||  ||||||| |||||||||||||    
T  40122827 aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaacaacttatagagatgtcataaactattttca 40122740  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 838
Target Start/End: Original strand, 24785233 - 24785283
Alignment:
Q  788 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactat 838  Q
    |||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||    
T  24785233 agagcttatgtaaataagctaaaaacaacttatgaacatgtcataagctat 24785283  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 824
Target Start/End: Complemental strand, 28622082 - 28622005
Alignment:
Q  747 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaag 824  Q
    ||||||| ||||||| |||||||||| ||||||||  ||  ||| ||||||||||||| || ||| || |||||||||    
T  28622082 tttttgtgtaagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatgaag 28622005  T

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Target: scaffold0091 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 812
Target Start/End: Original strand, 6945 - 7004
Alignment:
Q  753 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 812  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  6945 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 7004  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 823
Target Start/End: Complemental strand, 9109333 - 9109258
Alignment:
Q  748 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 823  Q
    |||||||||||||| |||||||||| || ||||| |||  ||| | |||||||||||| | ||| |||||||||||    
T  9109333 ttttgtataagctataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatgaa 9109258  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 792 - 823
Target Start/End: Original strand, 33737774 - 33737805
Alignment:
Q  792 cttatgaaaataagctaaaaccaacttatgaa 823  Q
    ||||||||||||||||||||||||||||||||    
T  33737774 cttatgaaaataagctaaaaccaacttatgaa 33737805  T

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