View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10911_low_10 (Length: 238)
Name: NF10911_low_10
Description: NF10911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10911_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 52550702 - 52550569
Alignment:
| Q |
105 |
tttgaatttagtttcatttgtcaaaatgttaaaaagaaaggtaattcaattttttatgtacaaaaatttagtattattttgaagataggtacgatttggt |
204 |
Q |
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| T |
52550702 |
tttgaatttagtttcatttgtcaaaatgttaaaaagaaaggtaattcaattttttatgtacaaaaatttagtattattttgaagataggtacgatttggt |
52550603 |
T |
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| Q |
205 |
taagttcatcaaggtggtgcaacaagctgggctt |
238 |
Q |
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| T |
52550602 |
taagttcatcaaggtggtgcaacaagctgggctt |
52550569 |
T |
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 5229521 - 5229605
Alignment:
| Q |
8 |
ttcaaaaggctaaagatggaggcttagatgttatacaaactcatgtgttctggaatggacatgagccttctcctggacatgtaat |
92 |
Q |
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| T |
5229521 |
ttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagccttctcctggaaatgtaat |
5229605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 7344393 - 7344469
Alignment:
| Q |
7 |
attcaaaaggctaaagatggaggcttagatgttatacaaactcatgtgttctggaatggacatgagccttctcctgg |
83 |
Q |
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| T |
7344393 |
attcaaaaagcaaaagatggagggttagatgttattgatacttatgtgttttggaatgttcatgaaccttctcctgg |
7344469 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 17124572 - 17124632
Alignment:
| Q |
174 |
agtattattttgaagataggtacgatttggttaagttcatcaaggtggtgcaacaagctgg |
234 |
Q |
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| T |
17124572 |
agtattactttgaagatagatttgacttggttaagttcatcaaagtggttcaacaagctgg |
17124632 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 5450752 - 5450822
Alignment:
| Q |
13 |
aaggctaaagatggaggcttagatgttatacaaactcatgtgttctggaatggacatgagccttctcctgg |
83 |
Q |
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| T |
5450752 |
aaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttcacctgg |
5450822 |
T |
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