View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10911_low_2 (Length: 605)
Name: NF10911_low_2
Description: NF10911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10911_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 395 - 587
Target Start/End: Original strand, 49767202 - 49767393
Alignment:
| Q |
395 |
ttggtttggttgatgagaaagtagtagataggtagattttgctttatgtaatagattgtgttgtactttgtgttagggactgtcttgaatgccttttagc |
494 |
Q |
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| T |
49767202 |
ttggtttggttgatgagaaagtagtagataggtagattttgctttatgtaatagattgtgttgtactttgtgttagggactgtcttgaatgccttttagc |
49767301 |
T |
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| Q |
495 |
tagtttagctctgttatctatctttgtgtaatttgatttgctttttacacaacacccacccacaaactcaaaaggaagtgagagagacaaaga |
587 |
Q |
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| T |
49767302 |
tagtttagctctg-tatctatctttgtgtaatttgatttgctttttacacaacacccacccacaaactcaaaaggaagtgagagagacaaaga |
49767393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 174 - 371
Target Start/End: Original strand, 49766980 - 49767177
Alignment:
| Q |
174 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctgtatggatgatcaatgcattgcatgccatcaatggaatcatc |
273 |
Q |
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| T |
49766980 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctatatggatgatcaatgcattgcatgccatcaatggaatcatc |
49767079 |
T |
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| Q |
274 |
ttcaacaccaatgttaactcttnnnnnnnnnnnnnnnnntcctttcataggttccatgtggaggatgtgaatcatccaaatctaaaataatagtatct |
371 |
Q |
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| T |
49767080 |
ttcaacaccaatgttaactcttccaccaccaccacctcctcctttcataggttccatgtggaggatgtgaatcatccaaatctaaaataatagtatct |
49767177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 49766804 - 49766881
Alignment:
| Q |
1 |
agaagaagatgaagttacagcagttgtagctgatacagtgttgatg---gaagaagaagaaggacaatgacgagtagt |
75 |
Q |
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| T |
49766804 |
agaagaagatgaagttacagcagttgttgctgatacagtgttgatggaagaagaagaagaaggacaatgacgagtagt |
49766881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 14137753 - 14137707
Alignment:
| Q |
176 |
agtttaccaagtttttcttgaagacaaaaagcacagatcccaccagg |
222 |
Q |
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| T |
14137753 |
agtttaccaagtttttcttgaagacaaaaagcacatataccaccagg |
14137707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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