View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10911_low_5 (Length: 330)
Name: NF10911_low_5
Description: NF10911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10911_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 29736826 - 29737142
Alignment:
| Q |
1 |
aaggtgtgtcaccgaataatgaaatgaatgaatgaatgagaagctagtgctaaatgacgaaatgannnnnnnnnnnnnnnnnnnnnnnattccacttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29736826 |
aaggtgtgtcaccgaataatgaaatgaatgaatgaatgagaagctagtgctaaatgacgaaatggtttttttgacggttttattttttattccacttctt |
29736925 |
T |
|
| Q |
101 |
ccttaatgtttccgtaaaaagatagtcaatgctgttgctaaaggtaacagtcaataattaaacnnnnnnnactcaatataatataggagtacttaatgtg |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29736926 |
ccttaatgtttccgtaaaaagatagtcaatgatgttgctaaaggtaacagtcaataattaaactttttttactcaatataatataggagtacttaatgtg |
29737025 |
T |
|
| Q |
201 |
acatcaatcattactaggatttaagactagattgctttttaaattgaattaaagtgattaatacccttagtatctttttatcgtcttctcctaacatatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29737026 |
acatcaatcattactaggatttaagactagattgctttttaaattgaattaaagtgattaataccctcagtatctttttatcgtcttctcctaacatatg |
29737125 |
T |
|
| Q |
301 |
gttcttctgatgtccat |
317 |
Q |
| |
|
|||||||| |||||||| |
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| T |
29737126 |
gttcttcttatgtccat |
29737142 |
T |
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