View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10911_low_6 (Length: 301)

Name: NF10911_low_6
Description: NF10911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10911_low_6
NF10911_low_6
[»] chr1 (5 HSPs)
chr1 (18-186)||(4877533-4877702)
chr1 (223-291)||(4877690-4877758)
chr1 (160-210)||(670434-670484)
chr1 (171-216)||(28326870-28326916)
chr1 (10-60)||(47569542-47569592)
[»] chr3 (1 HSPs)
chr3 (138-216)||(47923009-47923090)
[»] chr2 (1 HSPs)
chr2 (180-216)||(9066862-9066898)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 4877533 - 4877702
Alignment:
Q  18 aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877533 aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct 4877632  T
Q  118 atggaaataaggatcggaacttgtttgttcgcgga-ttgattgctagaggtctattagattacatgcttt 186  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4877633 atggaaataaggatcggaacttgtttgttcgcggatttgattgctagaggtctattagattacatgcttt 4877702  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 4877690 - 4877758
Alignment:
Q  223 gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgcttct 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4877690 gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgtttct 4877758  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 670484 - 670434
Alignment:
Q  160 ctagaggtctattagattacatgctttttggtttgctaattaaagaactat 210  Q
    |||||||||||||||||||||||||||   |||| ||||||||||||||||    
T  670484 ctagaggtctattagattacatgctttccagttttctaattaaagaactat 670434  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 28326870 - 28326916
Alignment:
Q  171 ttagattacatgctttttg-gtttgctaattaaagaactatgctttt 216  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||    
T  28326870 ttagattacatgcttttttagtttgctaattaaaggactatgctttt 28326916  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 47569542 - 47569592
Alignment:
Q  10 aactatttaaagttggcttgtttggtgaagcatcgaagttaccaaaagaca 60  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||||    
T  47569542 aactatttaaagtgggcttgtttggtgaagcattgacgttatccaaagaca 47569592  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 47923090 - 47923009
Alignment:
Q  138 ttgtttgttcgcggattgattgctagaggtctatta---gattacatgctttttggtttgctaattaaagaactatgctttt 216  Q
    ||||| ||||| || |||||||||||||||||||||   ||||| |||||| ||||||||||||| ||||||||||| ||||    
T  47923090 ttgttcgttcgtgggttgattgctagaggtctattatcagattatatgcttattggtttgctaatcaaagaactatgatttt 47923009  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 9066862 - 9066898
Alignment:
Q  180 atgctttttggtttgctaattaaagaactatgctttt 216  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  9066862 atgctttttggtttgctaattgaaggactatgctttt 9066898  T

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