View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10911_low_7 (Length: 297)
Name: NF10911_low_7
Description: NF10911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10911_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13446076 - 13445794
Alignment:
| Q |
1 |
tattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgagacatctatatctctagactacacatattgacttcaggtca |
100 |
Q |
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| T |
13446076 |
tattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgaaacatccatatctctagactacccatattgacttcaggtca |
13445977 |
T |
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| Q |
101 |
gtatattcttgagatcaaagcataagatgagatgacagtgaaaacaccattctccgaatcccataaccatttatattcctttgaggcaaattgaagtatg |
200 |
Q |
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| T |
13445976 |
gtatattcttgagatcaaagcataagatgagatgacagtgaaaacactattctccgaatcccataaccatttatattcctttgaggcaaattgaagtatg |
13445877 |
T |
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| Q |
201 |
tagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaatgaaagaat |
283 |
Q |
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| T |
13445876 |
tagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaatgaaagaat |
13445794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 31959396 - 31959303
Alignment:
| Q |
185 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaatgaaa |
279 |
Q |
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| T |
31959396 |
ggcaaattgaaggatgtagctgtatgatttcccagtagctattgcatatctgtcatacat-taagaaaatacaaacagtgagattaaaaatgaaa |
31959303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 31966386 - 31966297
Alignment:
| Q |
185 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaat |
275 |
Q |
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| T |
31966386 |
ggcaaattgaagtatatagctgtatgatttcccagtagctattgcatatctgtcatacat-ttagaaaacacaaacaatgatattagaaat |
31966297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 20981702 - 20981794
Alignment:
| Q |
185 |
ggcaaattgaagtatgtagctgtatgatttcacggtagttatcgcatatctgttatttatatttgaaaacacaaacaatgagattaaaaatga |
277 |
Q |
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| T |
20981702 |
ggcaagttgaagtatgtaactctatgatttcctagtagctattgcatatttgtcatccatattagaaaacacaaactgtgagattaaaaatga |
20981794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 20973525 - 20973553
Alignment:
| Q |
187 |
caaattgaagtatgtagctgtatgatttc |
215 |
Q |
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| T |
20973525 |
caaattgaagtatgtagctgtatgatttc |
20973553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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