View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_high_14 (Length: 369)
Name: NF10912_high_14
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 41223223 - 41223401
Alignment:
| Q |
12 |
ttggactgaatgatggtaatccttgttgaacaaggagacaaaagtggtacttttgtgtgtctgtgttttttatggtgacgttgccaaaaccacagattga |
111 |
Q |
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| T |
41223223 |
ttggactgaatgatggtaatccttgttgaacaaggagacaaaagtggtacttttgtgtgtctgtgttttttatggtgacgttgccaaaaccacagattga |
41223322 |
T |
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| Q |
112 |
gacttgagatttgagaccagtccatcacagcttgagtttttgctgtgatttataacaattcattcttgccaatttgcca |
190 |
Q |
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| T |
41223323 |
gacttgagatttgagaccagtccatcacagcttgagtttttgctgtgatttataacaattcattcttgccaatttgcca |
41223401 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 41223468 - 41223566
Alignment:
| Q |
257 |
gtaagaactgtatcatgtcatcttgcattttatgacttgtgtaattgattaatacttggtccaacnnnnnnnnnaattcatgtgtattgggccaaactg |
355 |
Q |
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| T |
41223468 |
gtaagaactgtatcatgtcatcttgcattttatgacttgtgtaattgattaatacttggtccaaccttttttttaattgatgtgtattgggccaaactg |
41223566 |
T |
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