View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_high_19 (Length: 250)
Name: NF10912_high_19
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_high_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 48649946 - 48650181
Alignment:
| Q |
15 |
caaagggtatggatttgtaacattcaaagatgcagaggctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatggtcgacgagccaactgcaat |
114 |
Q |
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| T |
48649946 |
caaagggtatggatttgtaacattcaaagatgcagattctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatggtcgacgagccaactgcaat |
48650045 |
T |
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| Q |
115 |
atcgcttctcttggtgctcgtcgtccaaggtcttctcccatcannnnnnnnnnnnnnnnnnnnnnnnttccatacacacaaggaggaacaaagaatatcc |
214 |
Q |
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| T |
48650046 |
atcgcttctcttggtgctcgtcgtccaaggtcttctcccatcactcctcctccttctcctcctcctcttccatacacacaaggaggaacaaagaatatcc |
48650145 |
T |
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| Q |
215 |
accgtagaaaccagcagcaggttcaatggtattatc |
250 |
Q |
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| T |
48650146 |
accgtagaaatcagcagcaggttcaatggtattatc |
48650181 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 41290796 - 41290736
Alignment:
| Q |
35 |
cattcaaagatgcagaggctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatgg |
95 |
Q |
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| T |
41290796 |
cattcaaggaagcagaggcagcaaataaggcttgcgaggaaccaagtgtgaacatcaatgg |
41290736 |
T |
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