View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_high_3 (Length: 589)
Name: NF10912_high_3
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 22085595 - 22085007
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtatatactatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22085595 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtatatactatat |
22085496 |
T |
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| Q |
101 |
atttactatctttcgccatagcagtcactactggcaccgttggatttgagatagaaacaatttacattttctaaactcggatccagtgactccgtagtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22085495 |
atttactatctttcgccatagcagtcactactggcaccgttggatttgagatagaaacaatttacattttctaaactcggatccagtgactccgtagtgg |
22085396 |
T |
|
| Q |
201 |
ctgcaatatttggaagctatagaaaattgaaacactaaaagaatatagaaatcttggtgatcaattagtttaaacgtttagtctatatccaacaattagc |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22085395 |
ctgcaatatttggaagcaatagaaaattgaaacactaaaagaatatagaaatcttggtgatcaattagtttaaacgtttagtctatatccaacaattagc |
22085296 |
T |
|
| Q |
301 |
atttaaatttcaaatgtccttaatttcatgattttaatggcggtcgcagttgcggccaatgcaaccgaaaaagtagttttgatatggttgggtagatctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22085295 |
atttaaatttcaaatgtccttaatttcatgattttaatggcggttgcagttgcggccaatgcaaccgaaaaagaagttttgatatggttgggtagatctc |
22085196 |
T |
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| Q |
401 |
aaaatcttttatattgctgcaatttaaatgccttcttaaatcattaagtttgattaatttaatggattggatgcatgtgctagatataattgaaggaatg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22085195 |
aaaatcttttatattgctgcaatttaaatgccttcttaaatcattaagtttgattaatttaatggattggatgcatgtgctagatataattgaaggaatg |
22085096 |
T |
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| Q |
501 |
tttgtatggaatagataataaatgaggaatgttaattgatgttcaactaattcatttatgtatttatttattatgtttgctaacaaatc |
589 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22085095 |
tttgtatggaataaataataaatgaggaatgttaattgatgttcaactaattcatttatgtatttatttattatgtgtgctaacaaatc |
22085007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 40040826 - 40040917
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtata |
92 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||| |||||||||||||||| | ||||||||||||| |
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| T |
40040826 |
atatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacagatgtgattgtggcacactattctccaggtata |
40040917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 38895945 - 38895872
Alignment:
| Q |
2 |
tatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcac |
75 |
Q |
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||||| |||||||| ||||||||||| || |||| |||||| |||||||| |||||||||||||||||||| |
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| T |
38895945 |
tatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcac |
38895872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 28496195 - 28496104
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtata |
92 |
Q |
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||||||||| |||||||||||||||||||||| || | ||||| || ||||| ||||||||||| |||||||| | ||||| ||||||| |
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| T |
28496195 |
atatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggtata |
28496104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12804600 - 12804526
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcac |
75 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||| | |||||| |||||||| |
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| T |
12804600 |
atatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtggcac |
12804526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 36989377 - 36989467
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggtat |
91 |
Q |
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|||||| |||||||||||||||||||||||| ||| || ||||| || || || ||||||||||| ||||| || || || ||||||||| |
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| T |
36989377 |
atatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtggaaccatcttttccaggtat |
36989467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4160414 - 4160485
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtgg |
72 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||| |||||||| |||| |||||| || ||||| ||||| |
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| T |
4160414 |
atatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtgg |
4160485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42287154 - 42287228
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcac |
75 |
Q |
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|||||| ||||||||||| |||||||| ||| |||| |||||| |||||||| || | ||||||||||||||| |
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| T |
42287154 |
atatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatgtgattgtggcac |
42287228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 12774975 - 12775063
Alignment:
| Q |
2 |
tatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta |
90 |
Q |
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||||| |||||||||||||||||||||||| || | |||||| |||| ||||| | |||||| |||||||| | ||||||||||| |
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| T |
12774975 |
tatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta |
12775063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40749427 - 40749516
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta |
90 |
Q |
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||||||||| |||||||||||||||||||| | || | |||||| |||||||| || || ||||||||||| ||| | ||||| ||||| |
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| T |
40749427 |
atatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctcaaggta |
40749516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 52248429 - 52248369
Alignment:
| Q |
16 |
tgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtggcaca |
76 |
Q |
| |
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||||| ||||| ||||| |||| ||||||||||||||||| |||||||||||||||||| |
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| T |
52248429 |
tgatttgaaagttcatatgaagagctgtggaactagagagtataaatgtgattgtggcaca |
52248369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5788812 - 5788741
Alignment:
| Q |
1 |
atatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtgattgtgg |
72 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||| | |||||| |||||||| || | |||||| ||||| |
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| T |
5788812 |
atatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtgg |
5788741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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