View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10912_high_4 (Length: 545)
Name: NF10912_high_4
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Complemental strand, 47894686 - 47894153
Alignment:
| Q |
14 |
gaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaatacaagaagaaacctaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894686 |
gaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaatacaagaagaaacctaaa |
47894587 |
T |
|
| Q |
114 |
tgtcaaaaggaattaagaaaacagatacagagacaccaaaaagccatactcctcaacaatgcacagagagctgttttatttctttttgcatcattcaact |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894586 |
tgtcaaaaggaattaagaaaacagatatagagacaccaaaatgccatactcctcaacaatgcacagagagctgttttatttctttttgcatcattcaact |
47894487 |
T |
|
| Q |
214 |
atacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaacaccatcgtttgag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894486 |
atacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaacaccatcgtttgag |
47894387 |
T |
|
| Q |
314 |
ttcaacctaccaaatttcgcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttgatggaagactcaaaa |
413 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894386 |
ttcaacctaccaaatttctcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttgatggaagactcaaaa |
47894287 |
T |
|
| Q |
414 |
aaccacctcgtgg------------------agaacccatcttagacaccggactccattcatcaaccctaacactcctcatgaagccaactaattccct |
495 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47894286 |
aaccacctcgtggtcgtggagaaccaaacacagaacccatcttagacaccggactccattcatcaaccctaacactcctcatgaagccaactaattccct |
47894187 |
T |
|
| Q |
496 |
cacgttcaccggtgggacaccgtatcgagatttt |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47894186 |
cacgttcaccggtgggacaccgtatcgagatttt |
47894153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University