View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_high_5 (Length: 534)
Name: NF10912_high_5
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Complemental strand, 11698759 - 11698251
Alignment:
| Q |
18 |
agttatgacttatgggcgacatagttagcttgcgcccgaataaaacttacaccaaagtttggatatcgaccgagacaagctatacaatgattgaaaataa |
117 |
Q |
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| T |
11698759 |
agttatgacttatgggcgacatagttagcttgcgcccgaataaaacttacactaaagtttggatatcgaccgagacaagctatacaatgattgaaaataa |
11698660 |
T |
|
| Q |
118 |
gaccaaattcagtttggtagttgaatggaaaacaaaatgccgtcaaccaccggtttacaatctagttaaattgaaaccttatcaaagtccaactctccat |
217 |
Q |
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| T |
11698659 |
gaccaaattcagtttggtagttgaatggaaaacaaaatgccgtcaaccaccggtttacaatctagttaaattgaaaccttatcaaagtccaactctccat |
11698560 |
T |
|
| Q |
218 |
tctacttgatcgcctcagcaagnnnnnnntcaacctcttaggcttaagggacaccataaaacacaactgtttttgcaataacaaacttaccatgattttt |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11698559 |
tctacttgatcgcctcagcaagccccccctcaacctcttaggcttaagggacaccataaaacacaactgtttttgcaataacaaacttaccatgattttt |
11698460 |
T |
|
| Q |
318 |
acggatgcacataccaattccaaatatgttctggttagtaaccactgcagcgtccacattgcatttcaacttaccggcatttggtttgcttcatcgggga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11698459 |
acggatgcacataccaattccaaatatgttctggttagtaaccactgcagcgtccacattgcatttcaacttaccggcatttggtttgcttcatcgggga |
11698360 |
T |
|
| Q |
418 |
acttcctcctgcctagactcaccgcggttccctgtcctggactggcagacctgttgccaattatgcaggaaatctcgcgccagcatgaaagacacagccg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11698359 |
acttcctcctgcctagactcaccgcggttccctgtcctggactggcagacctgttgccaattatgcaggaaatctcgcgccagcatgaaagacacagccg |
11698260 |
T |
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| Q |
518 |
gcctttgct |
526 |
Q |
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| T |
11698259 |
gcctttgct |
11698251 |
T |
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