View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10912_high_7 (Length: 514)
Name: NF10912_high_7
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 35950470 - 35949981
Alignment:
| Q |
8 |
agaagcataggtgacaccattgacatgaacagaggcattaaagcttggcttgtgttgtggaccgtcattcgtggcagtgtatttcggcaaactccaccgt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35950470 |
agaagcaaaggtgacaccattgacatgaacagaggcattaaagcttggcttgtgttgcggaccgtcattcgtggcagtgtatttcggcaaactccaccgt |
35950371 |
T |
|
| Q |
108 |
ctctggtggcatagctgctgcaacttggtcttgaacattttcactttcactccttcctactatagctactgcatgaagaatatgagattaatttgaagaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35950370 |
ctctggtggcatagctgctgcaacttggtcttgaacattttcactttcactccttcctactatagctactgcatgaagaatatgagattaatttgaaaaa |
35950271 |
T |
|
| Q |
208 |
gatataacatggaccatttatgaaaatgaaaagtaaaaccaatgtcttgtcaactatacttacaagttacaaaaactattgtatataatttgaataatga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35950270 |
gatataacatggaccatttatgaaaatgaaaagtaaaaccaatgtcttgtcaactatacttacaagttacaaaaactcttgtatataatttgaataatga |
35950171 |
T |
|
| Q |
308 |
agtatcacatattttgtcaccgttatatattgtagtagatatatggttaaaattacgtgatatagagttgcatgctttgtgtaagccatgtggtgtattt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35950170 |
agtatcacatattttgtcaccgttatatattgtagtagatatatggttaaaattacatgatatagagttgcatgctttgtgtaagccatgtggtgtattt |
35950071 |
T |
|
| Q |
408 |
tgaagcctattttggtattttgtctttttgtctatagcattcannnnnnnataagaaacattggttttgagaataagtatgatacatttt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35950070 |
tgaagcctattttggtattttgtctttttgtttatagcattcatttttttataagaaacattcgttttgagaataagtatgatacatttt |
35949981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University