View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_high_9 (Length: 456)
Name: NF10912_high_9
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 384
Target Start/End: Complemental strand, 13629400 - 13629027
Alignment:
| Q |
6 |
ataggcttctgctatatagttcagtatgagaaagcatacatcttgaatggaatgaataatagacgcaactatttattgtgttaaggggaatataattttg |
105 |
Q |
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| T |
13629400 |
ataggcttctgctatatagttcagtatgagaaagcatacatcttgaat---------aatagacgcaactatttattgtgttgaggggaatataattttg |
13629310 |
T |
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| Q |
106 |
actcagatgttctggctttatgtattagtctttaggcagccttgtcactgaccttaagttgtacattaatgttgttttgcagtgatattgtcaaattact |
205 |
Q |
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| T |
13629309 |
actcagatgttctggctttatgtattagtctttaggcaaccttgtcactgaccttaagttgtacattaatgttgttttgcagtgatattgtcaaattact |
13629210 |
T |
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| Q |
206 |
acgacaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatg----ta |
301 |
Q |
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| T |
13629209 |
acgacaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatgtatgta |
13629110 |
T |
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| Q |
302 |
tgacctctggttacaccatcacaccattcagtactgatgctaagtgcttggttgtttttgcggtagatgaatgtccaacacgc |
384 |
Q |
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| T |
13629109 |
tgacctctggttacgccatcacaccattcagtactgatactaagtgcttggttgtttttgcggtagatgaatgtccaacacgc |
13629027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 209 - 380
Target Start/End: Original strand, 13511432 - 13511603
Alignment:
| Q |
209 |
acaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatgtatgacctc |
308 |
Q |
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| T |
13511432 |
acaagaaagttatgtcatcttgtatcagattcagaaacacttccagtggaattcgcctccagtcagatatgatgccttccatatggttatgtatgacctc |
13511531 |
T |
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| Q |
309 |
tggttacaccatcacaccattcagtactgatgctaagtgcttggttgtttttgcggtagatgaatgtccaac |
380 |
Q |
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| T |
13511532 |
tggttacgccatcacacaatccaatactgattctaagggcttggttgtttctgcggtagatgaatgtccaac |
13511603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 21778995 - 21778824
Alignment:
| Q |
209 |
acaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatgatttccgtatggttatgtatgacctc |
308 |
Q |
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||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
21778995 |
acaagaaagttatctcatcttgtatcagattcagaaacacttccagtggaattcgcctccagtcagatatgatgctttccatatggttatgtatgacctc |
21778896 |
T |
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| Q |
309 |
tggttacaccatcacaccattcagtactgatgctaagtgcttggttgtttttgcggtagatgaatgtccaac |
380 |
Q |
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| T |
21778895 |
tggttacgccatcacaccatccaatactgattctaagggcttggttgtttctgcagtagatgaatgtccaac |
21778824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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