View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10912_low_1 (Length: 651)
Name: NF10912_low_1
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Complemental strand, 6274891 - 6274258
Alignment:
| Q |
19 |
gattgtctatgattagttgacagctgacagttaaccaaaattattctcatcattagaacctttcaatcatt--------------aagattgcactacat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||| |
|
|
| T |
6274891 |
gattgtctatgattagttgacagctgacagttaaccaaaattattctcatcatttgaacctttcaatcatttaagataataagataagatagcactccat |
6274792 |
T |
|
| Q |
105 |
attaaataggatacttaaactaaatataaatatcaaatttgtactcatcataagtgataataacactcaaaatactgctcaaataaactaaaacgagtga |
204 |
Q |
| |
|
|| | |||||| |||| |||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
6274791 |
atcatataggagacttgaactaattataaatatcaaatttgtactcat---aagtgacaataaaactcaaaatacagctcaaataaactaaaatgagtga |
6274695 |
T |
|
| Q |
205 |
actttgctttatttctgggattagtctaaagactaacctatttatctctcttaatccaacagctctgcagcatgtggcatcactcttgaaatcggtctat |
304 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||| |||||| |
|
|
| T |
6274694 |
aattttctttatttctgggattagtctaaagaccaacctatttatctctcttaatccaacggctctcgagcatgcggcatcactcctgaaatcagtctat |
6274595 |
T |
|
| Q |
305 |
ttcgaagcagcactaatcgctgcatatcgagatttgaaaaagccgaggagtccatcttttggagggagattctctttcacaataggatgattgttgaatt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6274594 |
ttcgaagcagcactaatcgctgcatatcgagatttgaaaaagccgaggagtccatcttttggagggagattctctttcacaataggatgattgttgaatt |
6274495 |
T |
|
| Q |
405 |
cttgactccacttatagagcttaggaaatttgtcactgctaagaacctttaaccctacagcttcttcaatcacaggaagccagaaagctaagtaggaagc |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6274494 |
cttgactccacttatagagcttaggaaatttgtcactgctaagaacctttaaccctacagcttcttcaatcgcaggaagccagaaagctaagtaggaagc |
6274395 |
T |
|
| Q |
505 |
agcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattgtagggcttgcaatgattcttcaatgcctttc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6274394 |
agcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattgtagggcttgcaatgattcttcaatgcctttc |
6274295 |
T |
|
| Q |
605 |
tcacgttcttctttgttcactgtccatgcagcctttg |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6274294 |
tcacgttcttctttgttcactgtccatgcagcctttg |
6274258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 540
Target Start/End: Complemental strand, 6275343 - 6275266
Alignment:
| Q |
464 |
gcttcttcaatcacaggaagccagaaagctaag-taggaagcagcaatgtccacaatgctaatgttttctccaccaaa |
540 |
Q |
| |
|
||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
6275343 |
gcttcttcaatcacagggagtcagaaagcttaggtaggaagcagcaatgtccacaatactaattttctctccaccaaa |
6275266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 573
Target Start/End: Original strand, 23790170 - 23790240
Alignment:
| Q |
503 |
gcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaattg |
573 |
Q |
| |
|
|||| |||||| ||||||| ||| | ||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
23790170 |
gcagtaatgtcaacaatgccaatctcatctccaccaaagaatttgtccttgagctcattctctagaaattg |
23790240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 570
Target Start/End: Complemental strand, 23853371 - 23853299
Alignment:
| Q |
498 |
aggaagcagcaatgtccacaatgctaatgttttctccaccaaagaatttgtgcttgagttcattctcaagaaa |
570 |
Q |
| |
|
||||||||||||| ||||||| |||||| | ||||| |||||||| |||| ||| || |||||||||||||| |
|
|
| T |
23853371 |
aggaagcagcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctcattctcaagaaa |
23853299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 23821140 - 23821183
Alignment:
| Q |
530 |
tctccaccaaagaatttgtgcttgagttcattctcaagaaattg |
573 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||||||| |
|
|
| T |
23821140 |
tctccaccaaagaacttgtccttgagctcattctcaagaaattg |
23821183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 23801060 - 23801097
Alignment:
| Q |
533 |
ccaccaaagaatttgtgcttgagttcattctcaagaaa |
570 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
23801060 |
ccaccaaagaatttgtccttgagctcattctcaagaaa |
23801097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 571
Target Start/End: Original strand, 23805819 - 23805860
Alignment:
| Q |
530 |
tctccaccaaagaatttgtgcttgagttcattctcaagaaat |
571 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
23805819 |
tctccaccaaagaatttgtctttgagctcattctcaagaaat |
23805860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 23815693 - 23815733
Alignment:
| Q |
533 |
ccaccaaagaatttgtgcttgagttcattctcaagaaattg |
573 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
23815693 |
ccaccaaagaatttgtctttgagctcattctcaagaaattg |
23815733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University