View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_10 (Length: 425)
Name: NF10912_low_10
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 27752975 - 27753391
Alignment:
| Q |
1 |
tctcacttgaagagaagtcaccaaaagaacaataaggctgccgaattctgaacatctcccccaaaaacacgttttaccaatgggaaaagaaaaaacatta |
100 |
Q |
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| T |
27752975 |
tctcacttgaagagaagtcaccaaaagaacaataaggctgccgaattttgaacatctcccccaaaaacatgttttaccaatgggaaaagaaaaaacatta |
27753074 |
T |
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| Q |
101 |
agttgcgaagaaatctagtcaaccagtattgttctcccacnnnnnnnncataagttggtcaatgagttaaagacatcaagtggaacnnnnnnnn---caa |
197 |
Q |
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| T |
27753075 |
agttgcgaagaaatctagtcaactagtattgttctcccacaaaaaa--cataagttggtcaatgagttaaagacatcaagtggaacaaaaaaaaaaacaa |
27753172 |
T |
|
| Q |
198 |
tgcatagaaaagcaataatatgagaaacacataccccttcatctatcacaaaaacttcagacggggtagattcagatctgcatttagcatgaataatggg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27753173 |
tgcatagaaaagcaataatatgagaaacacataccccttcatctatcacaaaaacttcagacggggtagattcagatctgcatttagcatgaataatggg |
27753272 |
T |
|
| Q |
298 |
gcctaactgtgacatggccatgcctgttgttattccattaggcatattaaggtatacagctcctctatacatccaatcctctgtttcatcactgtaaaac |
397 |
Q |
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| T |
27753273 |
gcataactgtgacatggccatgcctgttgttattccattgggcatattaaggtatacagctcctctatacatccaatcctctgtttcatcactgtaaaac |
27753372 |
T |
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| Q |
398 |
tcttcaaaaggttctctgc |
416 |
Q |
| |
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| T |
27753373 |
tcttcaaaaggttctctgc |
27753391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 213 - 413
Target Start/End: Complemental strand, 3251892 - 3251693
Alignment:
| Q |
213 |
taatatgagaaacacataccccttcatctatcacaaaaacttcagacggggtagattcagatctgcatttagcatgaataatggggcctaactgtgacat |
312 |
Q |
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||||||||||| || |||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |
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| T |
3251892 |
taatatgagaa-catataccccttcgtccatcacaaaatcttcacacggggtagattcagatctgcatttagcatgaataatggagcctaactgcgacct |
3251794 |
T |
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| Q |
313 |
ggccatgcctgttgttattccattaggcatattaaggtatacagctcctctatacatccaatcctctgtttcatcactgtaaaactcttcaaaaggttct |
412 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
3251793 |
gtccatgcctgttgttattccattaggcgcattaaggtatacagctcctctatacatccactcctccgtttcatcactgtaaaactcttcaaaaggttct |
3251694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 227 - 413
Target Start/End: Complemental strand, 3263282 - 3263096
Alignment:
| Q |
227 |
cataccccttcatctatcacaaaaacttcagacggggtagattcagatctgcatttagcatgaataatggggcctaactgtgacatggccatgcctgttg |
326 |
Q |
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|||||||||| || |||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
3263282 |
cataccccttgatatatcacaaaatctttagacaaggtagattaagatctgcatttagcatgaataatggggcctaactgcgacatgtccatgcctgttg |
3263183 |
T |
|
| Q |
327 |
ttattccattaggcatattaaggtatacagctcctctatacatccaatcctctgtttcatcactgtaaaactcttcaaaaggttctc |
413 |
Q |
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|||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
3263182 |
ttattccattaggcgcattaaggtatacagctactctacacatccaatcctctgtttcatcactgtaaaacacatccaaaggttctc |
3263096 |
T |
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