View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_12 (Length: 409)
Name: NF10912_low_12
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 32616808 - 32616415
Alignment:
| Q |
16 |
cacaactctcatgcttgggctcttggttgggatacaagactctttgccccagcttacgcggttagtgttttgnnnnnnnatggatagaaccatagaattc |
115 |
Q |
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| T |
32616808 |
cacaactctcatgcttgggctcttggttgggatacaagactctttgccccagcttacgcggttagtgttttgtttttttatggatagaaccatagaattc |
32616709 |
T |
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| Q |
116 |
aactttcgagtttagaatacacagatgcactatgcaccaaccacttgcactatttggacacaatacaagtattgcttctcaagtatcattaaacaannnn |
215 |
Q |
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| T |
32616708 |
aactttcgagtttagaatacacagatgcactacgcaccaaccacttgcgctatttggacacaatacaagtattgcttctcaagtatgattaaacaatttt |
32616609 |
T |
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| Q |
216 |
nnnnnnnnnnnnnnngtgattgattattacagggaatagttacatcaggagtgcagtattacatacaaggtctggttataaaaactatgggaccagttat |
315 |
Q |
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| T |
32616608 |
ttttcttccttttttgtgattgattattacagggaatagttacatcaggagtgcagtattacatacaaggtctggttataaaaactatgggaccagttat |
32616509 |
T |
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| Q |
316 |
tgtaactgcttttaatcctgtacgtatgatcatcgtaacggccctggcttgcatcatcctctctgaacaactttttcttggaaggtactgttct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616508 |
tgtaactgcttttaatcctgtacgtatgatcatcgtaacggccctggcttgcatcatcctctctgaacaactttttcttggaaggtactgttct |
32616415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 402
Target Start/End: Complemental strand, 10624166 - 10624060
Alignment:
| Q |
296 |
aaaactatgggaccagttattgtaactgcttttaatcctgtacgtatgatcatcgtaacggccctggcttgcatcatcctctctgaacaactttttcttg |
395 |
Q |
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|||||||||||||| ||| |||| ||||||||||||||| | |||||||| || || || ||| ||||||| || |||||||||| |||| ||||| |
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| T |
10624166 |
aaaactatgggacctgtttttgtgactgcttttaatcctttgcgtatgattatagtcacagccttggcttgtattgtcctctctgagaaactccatcttg |
10624067 |
T |
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| Q |
396 |
gaaggta |
402 |
Q |
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||||||| |
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| T |
10624066 |
gaaggta |
10624060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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