View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_13 (Length: 391)
Name: NF10912_low_13
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 202 - 388
Target Start/End: Original strand, 41589109 - 41589292
Alignment:
| Q |
202 |
actgctgttactgctattactactactcttccttcttcttccatccagcatgagtatcaacaaaactacaactttgtggatagccctaacttcagtgatt |
301 |
Q |
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| T |
41589109 |
actgctgttactgctattactactactcttccttc---ttccatccagcatgagtatcaacaaaactacaactttgtggatagccctaacttcagtgatt |
41589205 |
T |
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| Q |
302 |
atagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaattacaaccctttgctactcc |
388 |
Q |
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| T |
41589206 |
atagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaattacaacccttttctactcc |
41589292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 41588928 - 41589082
Alignment:
| Q |
18 |
gttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaa |
117 |
Q |
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| T |
41588928 |
gttccaacatcatgaacatgaagtgtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaa |
41589027 |
T |
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| Q |
118 |
gattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
172 |
Q |
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| T |
41589028 |
gattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
41589082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 41556286 - 41556440
Alignment:
| Q |
18 |
gttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaa |
117 |
Q |
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| T |
41556286 |
gttccaacatcatgaacatgaggagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagaatacactatgttccaa |
41556385 |
T |
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| Q |
118 |
gattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
172 |
Q |
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| T |
41556386 |
gattcttttgctcttcaactcactgagaaatcatttcatgatgttattgttcaca |
41556440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 41569983 - 41570137
Alignment:
| Q |
18 |
gttccaacatcatgaacatgaagagtcttccactgttcttggttctataaaccaatttctcatggaagaagactttgaaaaagagtacactcagttccaa |
117 |
Q |
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| T |
41569983 |
gttccaacacaatgaacatgatgggtcttccaatgctcttggttatataaaccgatttctcatggaagaagactttgaaaaagaatacactatgttccaa |
41570082 |
T |
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| Q |
118 |
gattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
172 |
Q |
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| T |
41570083 |
gattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
41570137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 261 - 388
Target Start/End: Original strand, 41556520 - 41556647
Alignment:
| Q |
261 |
acaaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatac |
360 |
Q |
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| T |
41556520 |
acaaaactacaactatgtgcatagccctaacttcagtgattatagtttcagcagtggcagcactagctcctttgaacctgatccaattatagactcatac |
41556619 |
T |
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| Q |
361 |
aactacaattacaaccctttgctactcc |
388 |
Q |
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| T |
41556620 |
aactataataacaacccttttctactcc |
41556647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 41579046 - 41579143
Alignment:
| Q |
75 |
tctcatggaagaagactttgaaaaagagtacactcagttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
172 |
Q |
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| T |
41579046 |
tctcatggaagaagactttgaaaaggagtacactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcaca |
41579143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 41570240 - 41570352
Alignment:
| Q |
263 |
aaaactacaactttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaa |
362 |
Q |
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| T |
41570240 |
aaaactacaaatttgtgcatagccctgacatcagtgattatagtttcagcagtggtagcactagctcctttgaacttgaaccaattatagagacatacaa |
41570339 |
T |
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| Q |
363 |
ctacaattacaac |
375 |
Q |
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| T |
41570340 |
ctacaattacaac |
41570352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 41579173 - 41579251
Alignment:
| Q |
272 |
actttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattat |
350 |
Q |
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| T |
41579173 |
actttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat |
41579251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 41582725 - 41582763
Alignment:
| Q |
350 |
tagactcatacaactacaattacaaccctttgctactcc |
388 |
Q |
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| T |
41582725 |
tagactcatacaactacaattacaacccttttctactcc |
41582763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 41588858 - 41588900
Alignment:
| Q |
44 |
cttccactgttcttggttctataaaccaatttctcatggaaga |
86 |
Q |
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| T |
41588858 |
cttccactgttcttggttttataaacaaatttctcatggaaga |
41588900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 41556217 - 41556258
Alignment:
| Q |
45 |
ttccactgttcttggttctataaaccaatttctcatggaaga |
86 |
Q |
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| T |
41556217 |
ttccactattcttggttttataaacaaatttctcatggaaga |
41556258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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