View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10912_low_14 (Length: 390)
Name: NF10912_low_14
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 54702054 - 54702378
Alignment:
| Q |
18 |
aacactcttgtggtctcaaagaaaatcttgtggtcaacacattaaaaatcttgtatannnnnnnnnggaataaatgtcatctttattaccatttagatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54702054 |
aacactcttgtggtctcaaagaaaatcttgtggtcaacacattaaaaatcttgtatatttttttttggaataaatgtcatctttattaccatttagatca |
54702153 |
T |
|
| Q |
118 |
aggtagttttcccctatgaatgagtcagtggttagaactaacaaaatagttgccaagttgatacattaatatggtcatggcagacaagttcataaactga |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54702154 |
aggtagttt-cccctatgaatgagtcagtggttagaactaacaaaatagttgccaagttgatacattaatatggtcatggcagacaagttcataaactga |
54702252 |
T |
|
| Q |
218 |
actctgtttaataattgaaacagctcctcatccagaaaatatcttccattatcgataatctacaggattggaaaattgatgattaaggtttaagaaggat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54702253 |
actctgtttaataattgaaacagctcctcatccagaaaatatcttccattatcgataatctacaggattggaaaattgatgattaaggtttaagaaggat |
54702352 |
T |
|
| Q |
318 |
aggtgcatcgaaagcgttgcaaggca |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
54702353 |
aggtgcatcgaaagcgttgcaaggca |
54702378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University