View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_16 (Length: 342)
Name: NF10912_low_16
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_16 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 28768605 - 28768279
Alignment:
| Q |
1 |
agaaaaacatctctcctcgaactcgaacccggttcaccggtgaatctcgaaagagcgttaactccggtgagtagaatgggtgggcattttgttcaaggtc |
100 |
Q |
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| T |
28768605 |
agaaaaacatctctcctcgaactcgaacccggttcaccggtgaatctcgaaagagcgttaactccgttgagtagaatgggtggacattttgttcaaggtc |
28768506 |
T |
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| Q |
101 |
acgtggatggcacgggggagattgtttcgatgattcctgaaggggattcgttgtgggtgaagattagggttgagaagaaggagttgttgaagtatattgt |
200 |
Q |
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| T |
28768505 |
acgtggatggcacgggggagattgtttcgatgattcctgaaggggattcgttgtgggtgaagattagggttgagaagaaggagttgttgaagtatattgt |
28768406 |
T |
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| Q |
201 |
tcctaaagggtttattgctgtggatgggactagtttgactgtggttgatgtttttgatgatgaaggttgtttcaattttatgttggttgcttatactcag |
300 |
Q |
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| T |
28768405 |
tcctaaagggtttattgctgtggatgggactagtttgactgtggttgatgtttttgacgatgaaggttgtttcaattttatgttggttgcttatactcag |
28768306 |
T |
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| Q |
301 |
aataagattgttgttcccatgaagaag |
327 |
Q |
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| T |
28768305 |
aataagattgttgttcccatgaagaag |
28768279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 326
Target Start/End: Original strand, 89533 - 89819
Alignment:
| Q |
40 |
gtgaatctcgaaagagcgttaactccggtgagtagaatgggtgggcattttgttcaaggtcacgtggatggcacgggggagattgtttcgatgattcctg |
139 |
Q |
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| T |
89533 |
gtgaatcttgaaagatcagtaacaccggttactcgaatgggtgggcatttcgtacagggtcacgtggatggcacgggggagattgtttctatggttcctg |
89632 |
T |
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| Q |
140 |
aaggggattcgttgtgggtgaagattagggttgagaagaaggagttgttgaagtatattgttcctaaagggtttattgctgtggatgggactagtttgac |
239 |
Q |
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| T |
89633 |
aaagggattctttgtggattaaggttagggttaataaggtggatttgcttaagtatattgtacctaaagggttcattgctgtggatgggactagtttgac |
89732 |
T |
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| Q |
240 |
tgtggttgatgtttttgatgatgaaggttgtttcaattttatgttggttgcttatactcagaataagattgttgttcccatgaagaa |
326 |
Q |
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| T |
89733 |
tgtggttgatgtttttgatgatgaagcttgtttcaatttcatgttggttgcttacactcagagcaagattgttattcctttgaagaa |
89819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 13887708 - 13887761
Alignment:
| Q |
68 |
tgagtagaatgggtgggcattttgttcaaggtcacgtggatggcacgggggaga |
121 |
Q |
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| T |
13887708 |
tgagtagaatgggtgggcatttcgtacagggtcacctggatggaaccggggaga |
13887761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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