View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10912_low_17 (Length: 302)

Name: NF10912_low_17
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10912_low_17
NF10912_low_17
[»] chr5 (3 HSPs)
chr5 (1-302)||(17933116-17933417)
chr5 (81-135)||(17734030-17734084)
chr5 (93-133)||(3147193-3147233)
[»] chr7 (6 HSPs)
chr7 (79-132)||(25314070-25314123)
chr7 (81-135)||(1094141-1094195)
chr7 (91-135)||(1562754-1562798)
chr7 (83-131)||(1571580-1571628)
chr7 (79-115)||(37233402-37233438)
chr7 (81-133)||(42907499-42907551)
[»] chr6 (4 HSPs)
chr6 (87-134)||(2730885-2730932)
chr6 (87-133)||(9742560-9742606)
chr6 (79-131)||(27616168-27616220)
chr6 (81-121)||(28651422-28651462)
[»] chr3 (3 HSPs)
chr3 (86-130)||(16108797-16108841)
chr3 (89-130)||(18403395-18403436)
chr3 (80-133)||(43949228-43949281)
[»] chr8 (2 HSPs)
chr8 (81-119)||(18735784-18735822)
chr8 (78-132)||(30017320-30017374)
[»] chr1 (1 HSPs)
chr1 (79-133)||(4541545-4541601)
[»] chr4 (1 HSPs)
chr4 (79-115)||(4145293-4145329)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 17933116 - 17933417
Alignment:
Q  1 aattcccttatgctataaaactatagcgtcactatagcctaaaacggtttgacaacacttcatactaaaaagtgtatcacaataacgatttgttcaaatt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17933116 aattcccttatgctataaagctatagcgtcactatagcctaaaacggtttgacaacacttcatactaaaaagtatatcacaataacgatttgttcaaatt 17933215  T
Q  101 ccgctatgctatagccgctatatgacaacactggttgcaatgctactatattctatagatgtatgatcaactaagttactaaataagtctgaactgatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  17933216 ccgctatgctatagccgctatatgacaacactggttgcaatgctactatattctatagatgtatgatcaactaagttactagataaatctgaaccgatga 17933315  T
Q  201 aaaaggaaataaggatagtcaattataagtcaaattcaatgcaaaccttgattttcggtgtttatatgtgtcttagccacactatcttcagtctgtgctg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17933316 aaaaggaaataaggatagtcaattataagtcaaattcaatgcaaaccttgattttcggtgtttatatgtgtcttagccacactatcttccgtctgtgctg 17933415  T
Q  301 ct 302  Q
    ||    
T  17933416 ct 17933417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 17734084 - 17734030
Alignment:
Q  81 aataacgatttgttcaaattccgctatgctatagccgctatatgacaacactggt 135  Q
    |||| |||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  17734084 aatagcgatttgtgcaaattctgctatgctatagccgctatttgacaacactggt 17734030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 3147193 - 3147233
Alignment:
Q  93 ttcaaattccgctatgctatagccgctatatgacaacactg 133  Q
    |||||||||| ||| |||||||||||||| |||||||||||    
T  3147193 ttcaaattccactacgctatagccgctatttgacaacactg 3147233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 25314070 - 25314123
Alignment:
Q  79 acaataacgatttgttcaaattccgctatgctatagccgctatatgacaacact 132  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  25314070 acaataacgatttgttcaaattcctctatgctataaccgctatttgacaacact 25314123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 1094141 - 1094195
Alignment:
Q  81 aataacgatttgttcaaattccgctatgctatagccgctatatgacaacactggt 135  Q
    |||||| |||||||||||  |||| |||||||||||||||| |||||||||||||    
T  1094141 aataacaatttgttcaaaccccgcaatgctatagccgctatttgacaacactggt 1094195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 1562798 - 1562754
Alignment:
Q  91 tgttcaaattccgctatgctatagccgctatatgacaacactggt 135  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||    
T  1562798 tgttcaaattccgcaatgctatagcttctatttgacaacactggt 1562754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 1571580 - 1571628
Alignment:
Q  83 taacgatttgttcaaattccgctatgctatagccgctatatgacaacac 131  Q
    |||| ||||||||||||| ||| |||||||||| ||||| |||||||||    
T  1571580 taacaatttgttcaaatttcgcaatgctatagctgctatttgacaacac 1571628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 37233438 - 37233402
Alignment:
Q  79 acaataacgatttgttcaaattccgctatgctatagc 115  Q
    |||||||| |||||||||||||||||| |||||||||    
T  37233438 acaataacaatttgttcaaattccgctttgctatagc 37233402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 42907551 - 42907499
Alignment:
Q  81 aataacgatttgttcaaattccgctatgctatagccgctatatgacaacactg 133  Q
    |||||| || ||||||||||| |||| |||||||| ||||| |||||||||||    
T  42907551 aataacaatctgttcaaattctgctacgctatagcagctatttgacaacactg 42907499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 2730885 - 2730932
Alignment:
Q  87 gatttgttcaaattccgctatgctatagccgctatatgacaacactgg 134  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  2730885 gatttgttcaaattccgctatgctatagccgttatttgacaacactgg 2730932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 9742560 - 9742606
Alignment:
Q  87 gatttgttcaaattccgctatgctatagccgctatatgacaacactg 133  Q
    ||||||||||||||| |||||  |||||||||||| |||||||||||    
T  9742560 gatttgttcaaattctgctattttatagccgctatttgacaacactg 9742606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 27616168 - 27616220
Alignment:
Q  79 acaataacgatttgttcaaattccgctatgctatagccgctatatgacaacac 131  Q
    |||| |||||||| |||||||||||||| | |||||||||||| | |||||||    
T  27616168 acaaaaacgattttttcaaattccgctacgttatagccgctatttaacaacac 27616220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 28651422 - 28651462
Alignment:
Q  81 aataacgatttgttcaaattccgctatgctatagccgctat 121  Q
    |||| |||||||||||||||||||| ||||||||| |||||    
T  28651422 aatagcgatttgttcaaattccgctctgctatagcagctat 28651462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 16108841 - 16108797
Alignment:
Q  86 cgatttgttcaaattccgctatgctatagccgctatatgacaaca 130  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||    
T  16108841 cgattttttcaaattccgctatgctatagccactatctgacaaca 16108797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 18403395 - 18403436
Alignment:
Q  89 tttgttcaaattccgctatgctatagccgctatatgacaaca 130  Q
    |||||| ||||||||||||||||||||| |||| ||||||||    
T  18403395 tttgttaaaattccgctatgctatagccactatttgacaaca 18403436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 43949281 - 43949228
Alignment:
Q  80 caataacgatttgttcaaattccgctatgctatagccgctatatgacaacactg 133  Q
    ||||| ||| |||||| ||||||||| ||||||||| ||||| |||||||||||    
T  43949281 caatagcgaattgttcgaattccgctttgctatagctgctatttgacaacactg 43949228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 18735822 - 18735784
Alignment:
Q  81 aataacgatttgttcaaattccgctatgctatagccgct 119  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  18735822 aataacaatttgttcaaattccgcaatgctatagccgct 18735784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 30017374 - 30017320
Alignment:
Q  78 cacaataacgatttgttcaaattccgctatgctatagccgctatatgacaacact 132  Q
    ||||||| |||||||||||||||| || |||||||| ||||||| | ||||||||    
T  30017374 cacaatagcgatttgttcaaattcagccatgctataaccgctatttaacaacact 30017320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 4541601 - 4541545
Alignment:
Q  79 acaataacgatttgttcaaattccgctatgctatagc--cgctatatgacaacactg 133  Q
    ||||||||||||||||||| ||| |||||||||||||  ||| || |||||||||||    
T  4541601 acaataacgatttgttcaagttctgctatgctatagctgcgccatttgacaacactg 4541545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 4145293 - 4145329
Alignment:
Q  79 acaataacgatttgttcaaattccgctatgctatagc 115  Q
    |||||||| |||||||||||||| |||||||||||||    
T  4145293 acaataacaatttgttcaaattctgctatgctatagc 4145329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University