View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_18 (Length: 282)
Name: NF10912_low_18
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 8143018 - 8143266
Alignment:
| Q |
15 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaaaagatatcccaagtactctgctttttggctgca |
114 |
Q |
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| T |
8143018 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaagagatatcccaagtactctgctttttggctgca |
8143117 |
T |
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| Q |
115 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttttcgaatttccagtgtcaccttagtatg |
214 |
Q |
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| T |
8143118 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccagtgtcaccttagtatg |
8143217 |
T |
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| Q |
215 |
ttacttgcgttcatatgtattgagataattggtgataccaattaaataa |
263 |
Q |
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| T |
8143218 |
ttacttgcgctcatatgtattgagataattggtgataccaattaaataa |
8143266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 8167840 - 8168083
Alignment:
| Q |
15 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtggatttcgttaacaaattgaaaagatatcccaagtactctgctttttggctgca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
8167840 |
atgaatgggatgcagggtacacagtacgatttggaataatttatgtcgatttcgttaacaatttgaagagatatcccaagtactctgctttttggctgca |
8167939 |
T |
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| Q |
115 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttttcgaatttccagtgtcaccttagtatg |
214 |
Q |
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| T |
8167940 |
aaagttccttctcaagggaaaacactaaatttgatgttcatttggcatgtctaagattttccattgttgtttgtcgaatttccaatgtcaccttagtata |
8168039 |
T |
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| Q |
215 |
ttacttgcgttcatatgtattgagataattggtgataccaatta |
258 |
Q |
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| T |
8168040 |
ttacttgctttcatatgtattgagataattggtgataccaatta |
8168083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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