View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_19 (Length: 278)
Name: NF10912_low_19
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 49946427 - 49946177
Alignment:
| Q |
6 |
agaagcataggcttgaattatagacttaatccatttttgggcaagccacgggcatgcatgaatgtggggacagatattagggtttccaggtgcttaaaag |
105 |
Q |
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| T |
49946427 |
agaaacataggcttgaattatagacttaatccatttttgggcaagccacgggcatgcatgaatgtggggacagatattagggtttccaggtgcttaaaag |
49946328 |
T |
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| Q |
106 |
tgcaaaaactgatgcataatacaaacctaataaagctagtagtattaattagccatgtagtacttaggaactactacaagacaaaaagatacgaacaaga |
205 |
Q |
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| T |
49946327 |
tgcaaaaactgatgcataatacaaacctaataaagctagtagtattaattagccat---gtacttagga---actacaagacaaaaagatacgaacaaga |
49946234 |
T |
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| Q |
206 |
tttatatctgagattgttatcgaagagtacctagctagcaatgagatgagacctaag |
262 |
Q |
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| T |
49946233 |
tttatatctgagattgttatcgaagagtacctagctagcaatgagatgagacctaag |
49946177 |
T |
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