View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_23 (Length: 240)
Name: NF10912_low_23
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27752968 - 27752747
Alignment:
| Q |
1 |
ccattatatcgtaaattgcacattttggctgaaatgcaaatgcaatgtcctgttttttcctgtcttcttctatgtaatggtttaaaatagctcgcaacac |
100 |
Q |
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| T |
27752968 |
ccattatatcgtaaattgcacattttggctgaaatgcaaatgcaatgtcctgttttttcctgtcttcttctatgtaatggtttaaaatagcttgcaacac |
27752869 |
T |
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| Q |
101 |
ttggtgtgataattttatgcttgaacaacgcatattaatgttagaaactgcaaatatgtgtgcctatttaatcgctgttaactttgcatgaatttattat |
200 |
Q |
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| T |
27752868 |
taggtgtgataattttatgctcgaacaacacatattaatgttagaaactgcaaatatgtgtgcctatttaatcgctgctaacttcgcatgaatttattat |
27752769 |
T |
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| Q |
201 |
ttcaattggacttttgcatgtg |
222 |
Q |
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| T |
27752768 |
ttcaattggacttttgcatgtg |
27752747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 27737360 - 27737293
Alignment:
| Q |
154 |
atatgtgtgcctatttaatcgctgttaactttgcatgaatttattatttcaattggacttttgcatgtg |
222 |
Q |
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| T |
27737360 |
atatatgtgcctatttaatggctgctaacttcgcatgatgttattatttc-agtggacttttgcatgtg |
27737293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 3252038 - 3252092
Alignment:
| Q |
4 |
ttatatcgtaaattgcacattttggctgaaatgcaaatgcaatgtcctgtttttt |
58 |
Q |
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| T |
3252038 |
ttatatcgtaaattgaacattttggctgaaatgcaaatgcaatgccatgtttttt |
3252092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 3252210 - 3252280
Alignment:
| Q |
152 |
aaatatgtgtgcctatttaatcgctgttaactttgcatgaatttattatttcaattggacttttgcatgtg |
222 |
Q |
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| T |
3252210 |
aaatatgcgttcctatttaatcgctgctaacttcgcatgatgttatgatttctagtggactttttcatgtg |
3252280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 3263279 - 3263343
Alignment:
| Q |
155 |
tatgtgtgcctatttaatcgctgttaactttgcatgaatttattatttcaattggacttttgcat |
219 |
Q |
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| T |
3263279 |
tatgagtgtctatttaatcgctgcttacttcgcatgatgttattatttcaagtgaacttttgcat |
3263343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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