View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_24 (Length: 238)
Name: NF10912_low_24
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44750935 - 44751156
Alignment:
| Q |
1 |
gtatcatacacattcatgcatctgcatctgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttg |
100 |
Q |
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| T |
44750935 |
gtatcgtacacattcatgcatctgcatctgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttg |
44751034 |
T |
|
| Q |
101 |
atcaaccacccaaactcgatgaacatggtttgtgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttagga |
200 |
Q |
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| T |
44751035 |
atcaaccacccaaactcgatgaacatggtttgcgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttagga |
44751134 |
T |
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| Q |
201 |
gtaccaatatcattctgtgtat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
44751135 |
gtaccaatatcattctgtgtat |
44751156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 44744323 - 44744516
Alignment:
| Q |
29 |
tgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttgatcaaccacccaaactcgatgaacatgg |
128 |
Q |
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||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44744323 |
tgataacattgattgccttataactctaatgacatcagtgagagacacaacacctacaagcaaaccctcttgatcaaccacccaaactcgatgaacatgg |
44744422 |
T |
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| Q |
129 |
tttgtgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtat |
222 |
Q |
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| T |
44744423 |
tttgcgaccgccttattgattacctcggacaaagtttattcagcatggcatgtcacaagctcccttctaggagtaccaatatcattatgtgtat |
44744516 |
T |
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