View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10912_low_8 (Length: 501)
Name: NF10912_low_8
Description: NF10912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10912_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Complemental strand, 39090660 - 39090191
Alignment:
| Q |
16 |
gttacatttagccccaacaatttcttaaatcgtcgctcctctagatggataaagacatataagataatgatttttcttgtgttcagttgggtgaatccag |
115 |
Q |
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| T |
39090660 |
gttacatttagccccaacaatttcttaaattgacgctcctctaaatggataaagacatataagataatgttttttcttgtgtccagttgggtaaatccgg |
39090561 |
T |
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| Q |
116 |
actggaacgatttttaagaatcgtaggtgaaaag---ctcccttaaaaagaatagattcattacaaacctgggttagcggttccaaacaatatatccgca |
212 |
Q |
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| T |
39090560 |
actggaacgatttttaagaatcgtaggtgaaaagaagctcccttaaaaaggatagattcattacaaacctgggttagtggttccaaacaatatatccgca |
39090461 |
T |
|
| Q |
213 |
atggcagcaccaccggcttgaccaggataaccagcccacaagatgcctataattcgaggatcattctttgcaaaagttatatctataggaccaccagaca |
312 |
Q |
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| T |
39090460 |
atggcagcaccaccggcttgaccaggataaccagcccacaaaatgcccataattcgaggatcattctttgcaaaagttatatctataggcccaccagaca |
39090361 |
T |
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| Q |
313 |
ttaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttgatgtccaggaagaagtaaaccagtcctatctaccatttc |
412 |
Q |
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| T |
39090360 |
ttaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttgatgtccaggaagaagtaaaccagtcctatctaccatttc |
39090261 |
T |
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| Q |
413 |
agcctcaattgactgatccaatcccatcactagaacagtagcatccgcttgacgggctgcatttagagcc |
482 |
Q |
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| T |
39090260 |
agcctcaattgactgatccaatcccatcactagaacagtagcatccgcttgacgggctgcatttagagcc |
39090191 |
T |
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Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 175 - 474
Target Start/End: Original strand, 44714921 - 44715220
Alignment:
| Q |
175 |
acaaacctgggttagcggttccaaacaatatatccgcaatggcagcaccaccggcttgaccaggataaccagcccacaagatgcctataattcgaggatc |
274 |
Q |
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||||||||||| |||| |||||||| || || || ||||| ||||||||||| ||||| || |||||||| |||||||| ||||| || | || || |
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| T |
44714921 |
acaaacctgggctagcagttccaaataaaatgtcagcaattgcagcaccaccagcttggcctggataacccgcccacaatatgccagcaactttggggtc |
44715020 |
T |
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| Q |
275 |
attctttgcaaaagttatatctataggaccaccagacattaagaccaaaatggttgggcctctcgaggcagccgctacctttgaaacaaggtcttgttga |
374 |
Q |
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| T |
44715021 |
attctttgcaaaagtaatgtccacaggcccaccagacatcaaaaccaaaatagttggtccctttgatgcagctgccacctttgaaacaagatcttgttga |
44715120 |
T |
|
| Q |
375 |
tgtccaggaagaagtaaaccagtcctatctaccatttcagcctcaattgactgatccaatcccatcactagaacagtagcatccgcttgacgggctgcat |
474 |
Q |
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| T |
44715121 |
tgtccaggcaaaagcaagctagtcctatcaacagtttcagcttcaatggattggtccaagcctatcactaaaatagttgcatctgcatgacgagctgcat |
44715220 |
T |
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