View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10913_high_1 (Length: 500)
Name: NF10913_high_1
Description: NF10913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10913_high_1 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 67 - 489
Target Start/End: Complemental strand, 107815 - 107391
Alignment:
| Q |
67 |
atagaataggaaaagggctacctgtaggtgttccacgaaaatgaaactaaatgaagaggttggttttgagtctcggaaggaatgaagtaactct--atga |
164 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||| |||| |
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| T |
107815 |
atagaataggaaaagtgctacctctaggtgttccacgaaaatgaagctaaatgaagaggttggttt-gagtgtcgtaaggaatgaagtaactctttatga |
107717 |
T |
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| Q |
165 |
aaattagctttcaattagggccttgattgaaatgacacaa-ggaagaataaggtacgctcttgcctttcacataaggatggtatgaatggatgaacaaaa |
263 |
Q |
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||| ||| ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
107716 |
aaaatagttttcaattagggccttgattgaaatgacaaaatggaagaataagatacgatcttgcctttcacaaaaggatggtatgaatggatgaacaaaa |
107617 |
T |
|
| Q |
264 |
ggttatgacaaagatggtggtatgagtatgatgatcataatggttgaaggaaagagaggacgtgcttgtacccaaaatgagaaggttgattattctattc |
363 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
107616 |
ggttatgacaaagatggtggtatgagtatgatgcttataatggttgaagaaaagagaggacgtgcttgtatccaaaatgagaaggttgatttttctattc |
107517 |
T |
|
| Q |
364 |
aagtcatagtatggaatcaaggcggtcaattgaatttaagggactt-aaatcatattaaaagatgaggtattagagtgaaaggaaataagagtgaggtat |
462 |
Q |
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|||| |||||||||||||||||| |||||||| |||||||||||| |||||||||||| || |||||||||||||||||| ||||||| |||||||||| |
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| T |
107516 |
aagttatagtatggaatcaaggcaatcaattgattttaagggacttaaaatcatattaagag-tgaggtattagagtgaaaagaaataaaagtgaggtat |
107418 |
T |
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| Q |
463 |
gcataaccggtaatggtttcttgtgat |
489 |
Q |
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| T |
107417 |
gcacaaccgctaatggcttcttgtgat |
107391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 266 - 489
Target Start/End: Complemental strand, 6308382 - 6308157
Alignment:
| Q |
266 |
ttatgacaaagatggtggtatgagtatgatgatcataatggttgaaggaaagagaggacgtgcttgtacccaaaatgagaaggttgattattctattcaa |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6308382 |
ttatgacaaagatggtggtatgagtatgatgatcataatggttgaaggaaagagaggacgtgcttgtacccaaaatgagaaggttgatttttctattcaa |
6308283 |
T |
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| Q |
366 |
gtcatagtatggaatcaaggcggtcaattgaatttaagggacttaaatcatattaaaagatgag--gtattagagtgaaaggaaataagagtgaggtatg |
463 |
Q |
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| T |
6308282 |
gtcatagtatggaatcaaggcaatcaattgaatttaagggacttaaatcatattaaaagaggaggtgtattagagtgaaaggaaataagagtgaggtatg |
6308183 |
T |
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| Q |
464 |
cataaccggtaatggtttcttgtgat |
489 |
Q |
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| T |
6308182 |
cataaccggtaatggttttttgtgat |
6308157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 6308534 - 6308383
Alignment:
| Q |
91 |
taggtgttccacgaaaatgaaactaaatgaagaggttggttttgagtctcggaaggaatgaagtaactctatgaaaattagctttcaattagggccttga |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
6308534 |
taggtgttccacgaaaatgaaactaaatgaagaggttggttttgagtctcggaaggaatgaagtaactatatgaaaattagctttcaattagggccttca |
6308435 |
T |
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| Q |
191 |
ttgaaatgacacaaggaagaataaggtacgctcttgcctttcacataaggat |
242 |
Q |
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| T |
6308434 |
ttgaaatgacacaaagaagaataaggtacgctcttgcctttcacataaggat |
6308383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 313 - 461
Target Start/End: Complemental strand, 29451386 - 29451237
Alignment:
| Q |
313 |
gaaagagaggacgtgcttgtacccaaaatgagaaggttgattattctattcaagtcatagtatggaatcaaggcggtcaattgaatttaagggactt-aa |
411 |
Q |
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|||||||||||||||| | ||||||| |||||||||||||| |||||||| |||||||||||||| | ||||| ||||||| |||||||||||| || |
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| T |
29451386 |
gaaagagaggacgtgcatagacccaaattgagaaggttgattcttctattccagtcatagtatggagttaaggcaaccaattgattttaagggacttaaa |
29451287 |
T |
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| Q |
412 |
atcatattaaaagatgaggtattagagtgaaaggaaataagagtgaggta |
461 |
Q |
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| T |
29451286 |
atcatattaaaagatgaggtattagagtgaaagggaataaaagtggggta |
29451237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 3279982 - 3280089
Alignment:
| Q |
169 |
tagctttcaattagggccttgattgaaatgacacaaggaa-gaataaggtacgctcttgcctttcacataaggatggtatgaatggatgaacaaaaggtt |
267 |
Q |
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|||||| | |||||||||||||||| ||||||| || ||| |||||| |||| |||| |||||||| || ||||||||||||||||||||| ||||| |
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| T |
3279982 |
tagcttacgattagggccttgattggaatgacataatgaaagaataacctacgatcttccctttcactcaaacatggtatgaatggatgaacaagaggtt |
3280081 |
T |
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| Q |
268 |
atgacaaa |
275 |
Q |
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||| |||| |
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| T |
3280082 |
atggcaaa |
3280089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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