View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10913_low_2 (Length: 466)
Name: NF10913_low_2
Description: NF10913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10913_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 126 - 450
Target Start/End: Original strand, 43007658 - 43007982
Alignment:
| Q |
126 |
tagcctgtagtatgaattgtgttaatgaaaaagtattaaaaattaggttcaaagtttacttctaactagcctagctatgactatnnnnnnnntattgtaa |
225 |
Q |
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| T |
43007658 |
tagcctgtagtatgaattgtgttaattaaaaagtattaaaaattaggttcaaagtttacttctaactagccttgctatgactataaaaaaaatattgtaa |
43007757 |
T |
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| Q |
226 |
aaagacgtaacgcaatttgtcatttttgttcgtaaatatgagatgtggtgttatatagtttttgaatgtattgaaattttgtaaatacctataggtgttt |
325 |
Q |
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| T |
43007758 |
aa-gacgtaacgcaatttatcatttttgttcgtaaatatgagatgtggtgtaatgtagtttttgaatgtattgaaattctgtaaatacctataagtgttt |
43007856 |
T |
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| Q |
326 |
cctttgttagtgattttacaaactaaattgattaaacaaaaaacacatttgaagatcaattcattaaa-gaaaaatacattcagagatatttttgtaact |
424 |
Q |
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| T |
43007857 |
cttttgttagtaattttacaaattaaattgattaaacaaaaaacacatttgaagatcaattcattaaaggaaaaatacattcagagatatttttgtaact |
43007956 |
T |
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| Q |
425 |
ttaatatttttaaatattacaataac |
450 |
Q |
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| T |
43007957 |
ttaatacttttaaatattacaataac |
43007982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 43007568 - 43007659
Alignment:
| Q |
6 |
agagagaagaattagaaagtgaaatttttgacaaatgatcatgtgatgattgnnnnnnnngagaccgataaaaagatagatgaggctagtta |
97 |
Q |
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| T |
43007568 |
agagaaaagaattagaaagtgaaatttttgacaaatgatcatgtgatgattgaaaaaaaagagaccgataaaaagatagatgaggctagtta |
43007659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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