View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10913_low_3 (Length: 459)
Name: NF10913_low_3
Description: NF10913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10913_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 24 - 433
Target Start/End: Original strand, 30571248 - 30571650
Alignment:
| Q |
24 |
ttttgcaaaataagttaaaataaatcaagaactaatggcaaataaaccgacaaagttaacagctaaacctaacaatgacatcacgttaatgatgaatgaa |
123 |
Q |
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| T |
30571248 |
ttttgcaaaataagttaaaataaatcaagaactaatggcaaataaaccggcaaagttaacagctaaacctaacaatgacatcacgttaatgatgaatgaa |
30571347 |
T |
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| Q |
124 |
acaataattaggagattgaaaagaagnnnnnnnnncgaataataataataatagtagaagaatgaatataccttagaaggatcaactttctggaagtttt |
223 |
Q |
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| T |
30571348 |
acaataattaggagattgaaaaaaa-------aaacgaataataataataatagtagaagaataaatataccttagaaggatcaactttctggaagtttt |
30571440 |
T |
|
| Q |
224 |
tgacgcaagaaacgacgcgatctgtgacctcagatttgtcgagaaacgtacccctaacctcttcgctgaagcgacgaaggaagaaattgggaataagacg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30571441 |
tgacgcaagaaacgacgcgatctgtgacctcagatttgtcgagaaacgtacccctaacctcttcgctgaagcgacgaaggaaaaaattgggaataagacg |
30571540 |
T |
|
| Q |
324 |
gaaaggagattggtgattcagtggacgagaattaacctgcactctcaagtagctgatcagaggtaaaccggttcttctcgccgccattgttgtagatgtc |
423 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30571541 |
gaaaggagattggtgattcagtggacgagaatcaacctgcactctcaagtagttgatcagaggtaaaccggttcttctcgccgccattgttgtagatgtc |
30571640 |
T |
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| Q |
424 |
aaaaacctca |
433 |
Q |
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| T |
30571641 |
aaaaacctca |
30571650 |
T |
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