View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10913_low_4 (Length: 334)
Name: NF10913_low_4
Description: NF10913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10913_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 40073383 - 40073057
Alignment:
| Q |
1 |
ccttcaccgcaacttgctagctacgcctagtctcttggatatccaaatggaacttcagacacagaagatgtcataagattcttcctcacaaacccataat |
100 |
Q |
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| T |
40073383 |
ccttcaccgcaacctgctagctacgcctagtctcttggatatccaaatggaacttcatacacagaagatgtcataagattcttcctcacaaacccataat |
40073284 |
T |
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| Q |
101 |
tacgaagcacttgattatcagcaaaattcaaagccctctccatctctttccaacaaacatcacccttataactagggttatgatccccactacatggctg |
200 |
Q |
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| T |
40073283 |
tacgaagcacttgattatcagcaaaattcaaagccctctccatctctttccaacaaacatcacccttataactagggttatgatccccactacatggctg |
40073184 |
T |
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| Q |
201 |
acaccccgtaaaatgcttaacaaacggcctcctttcactccatttcaaataaggctctctcatttcaccataccaaacactcaccttctctgaatgcctt |
300 |
Q |
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| T |
40073183 |
acaccccgtaaaatgcttaacaaacggcctcctttcactccatttcaaataaggctctctcatttcaccataccaaacactcaccttctctgaatgcctt |
40073084 |
T |
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| Q |
301 |
ctccttaaaaccctagctttcttctct |
327 |
Q |
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| T |
40073083 |
ctccttaaaaccctagctttcttctct |
40073057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 13713859 - 13713897
Alignment:
| Q |
105 |
aagcacttgattatcagcaaaattcaaagccctctccat |
143 |
Q |
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| T |
13713859 |
aagcacttgattatctgcaaaattaaaagccctctccat |
13713897 |
T |
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