View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10914_high_1 (Length: 516)
Name: NF10914_high_1
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10914_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Original strand, 26304260 - 26304752
Alignment:
| Q |
20 |
tgtaaccacagctgcatatgcaatttaaagccataattctaagctcatttaagataaaatttctcacctggctccattatgttcattttgatcatgataa |
119 |
Q |
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| T |
26304260 |
tgtaaccacagctgcatacgcaatttaaagccataattctaagctcatttacgataaaatttctcacctggctccattatgttcattttgatcatgataa |
26304359 |
T |
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| Q |
120 |
ttccaaggagtcccaaagcacctagctgatcctcctagcttgtctcctttacaaatctcagcccttttttctggcatattaataagctccttagaggcag |
219 |
Q |
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| T |
26304360 |
ttccaaggagtcccaaaacacctagctgatcctcctagtttgtctcctttacaaatctcagcccttttttctggcatattagtaagctccttcggggcaa |
26304459 |
T |
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| Q |
220 |
ttttctgagcagagttcatagagacaaaagcagcatcatttgttgcaacagttccacaaccaatccaatttctgaacacactagtcactctaacagaatt |
319 |
Q |
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| T |
26304460 |
ttttcttagcagggttcatagagacaaaagcagcatcatttgttgcaacagttccacaaccaatccaatttctgaacacactagtcactctaacagaatt |
26304559 |
T |
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| Q |
320 |
gcttctaatcttagtaaacgaggattgagattgagccgatgttgatgatgttggagtagaaaaagttgaatcaggaggcgtagtagtatcagttttgtta |
419 |
Q |
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| T |
26304560 |
gcttctaatcttagtaaatgaggattgagattgagccgatgttgatgatgttggagtagaaaaagttgaatcaggaggcgtagtagtatcagttttgtta |
26304659 |
T |
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| Q |
420 |
ttttgaccatcttttttacccttcttactcatcaaattatgatacaaagaaggaaatgagaaactatcaagcttctcatgattcttctcactc |
512 |
Q |
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| T |
26304660 |
ttttgaccatcttttttacccttcttactcatcaaattatgatacaaagaaggaaatgagaaactatcaagcttgtcatgattcttctcactc |
26304752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 502
Target Start/End: Complemental strand, 12134033 - 12133962
Alignment:
| Q |
431 |
ttttttacccttcttactcatcaaattatgatacaaagaaggaaatgagaaactatcaagcttctcatgatt |
502 |
Q |
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||||| |||||||||| |||||||||| ||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
12134033 |
tttttaacccttcttaatcatcaaattgcgatacaaagaaggaaatgagaaagtctcaaacttctcatgatt |
12133962 |
T |
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