View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10914_high_13 (Length: 243)
Name: NF10914_high_13
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10914_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 41083366 - 41083162
Alignment:
| Q |
14 |
gtgagatgaagtctacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41083366 |
gtgagatgaagactacggtcacttgtaagcatttgttcaggctatatcatttttcagcgtaagactcttacctctcacatctaagactgaacatctaaaa |
41083267 |
T |
|
| Q |
114 |
catgactcgagtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggatagactctaataacatgtttgaatttgtgattgagtttaac |
213 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41083266 |
cgtgacttgagtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggataggctctaataacatgtttgaatttgtgattgagtttaac |
41083167 |
T |
|
| Q |
214 |
acaac |
218 |
Q |
| |
|
||||| |
|
|
| T |
41083166 |
acaac |
41083162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 45089521 - 45089620
Alignment:
| Q |
124 |
gtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggatagactctaataacatgtttgaatttgtgattgagtttaacacaaccttac |
223 |
Q |
| |
|
|||||||||||| | |||||| |||||| |||||||||||||||| || |||||||||||||| || |||||||||| | ||||| |||||| ||||| |
|
|
| T |
45089521 |
gtggtccgatagggaaaagctgatagccggtggtcaaacaaatttttgacagactctaataacaccttagaatttgtgagtaagttttacacaatcttac |
45089620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University