View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10914_high_6 (Length: 374)

Name: NF10914_high_6
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10914_high_6
NF10914_high_6
[»] chr4 (1 HSPs)
chr4 (28-321)||(1193790-1194083)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 28 - 321
Target Start/End: Complemental strand, 1194083 - 1193790
Alignment:
Q  28 aaaatatttacaaa-gtcatagtgcctttattgaaagagcaccaacaaaaacagaaaataaattaacaaggatgccaactatgtattttctaaatttttg 126  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1194083 aaaatatttacaaaagtcatattgcctttattgaaagagcaccaacaaaaacagaaaataaattaacaaggatgccaactatgtattttctgaatttttg 1193984  T
Q  127 gtt-atatatcgagaagtattaaattatttccattttgccatgaaaattttgcaaaattcatgcgcaattggacacatatccaacttgaaaaatataaaa 225  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  1193983 gtttatatatcgagaagtattaaattatttccattttgccatgaaaattttgcaa--ttcatgcgcaattggacacatatccaacatgaaaaatataaaa 1193886  T
Q  226 tttgagnnnnnnncctttcaaatttgtcagctaaccaccaataattacaataaaccacaaaagaaacaggataatgcaagatttcttagattacta 321  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1193885 tttgagtttttttcctttcaaatttgtcagctaaccaccaataattacaataaaccacaaaagaaacaggataatgcaagatttcttagattacta 1193790  T

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