View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10914_high_8 (Length: 342)
Name: NF10914_high_8
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10914_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 43664056 - 43663717
Alignment:
| Q |
1 |
atcacttacagcataccctttgctctagcgtcaatattctccagctcctcaggggcaggccaaggtaaaacacaatcacaagtcataacccacttaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43664056 |
atcacttacagcataccctttgctctagcatcaatattctccagctcctcaggggcaggccaaggtaaaacacaatcacaagtcataacccacttaatta |
43663957 |
T |
|
| Q |
101 |
aacaattttactactaaacaaaagtgcttaatgatttgctttttgttcaannnnnnncagggttatctctaggagttctcaatcttgctattgtcatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43663956 |
aacaattttactactaaacaaaagtgcttaatgttttgctttttgttcaatttttttcagggttatctctaggagttctcaatcttgctattgtcatacc |
43663857 |
T |
|
| Q |
201 |
acaggttagaatttaatacacttca-nnnnnnnnnacttgttaattacttcactttatatattaaattaat----tttagtaatatgaattaaacaattg |
295 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43663856 |
acaggttagaatttaatacacttcattttgtttttacttgttaattacttcactttatatattaaattaatcttatttagtaatatgaattaaacaattg |
43663757 |
T |
|
| Q |
296 |
accaagtgtgacaacatgtatgtgtagatgattgtctctg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43663756 |
accaagtgtgacaacatgtatgtgtagatgattgtctctg |
43663717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24559876 - 24560146
Alignment:
| Q |
1 |
atcacttacagcataccctttgctctagcgtcaatattctccagctcctcaggggcaggccaaggtaaaacacaatcacaagtcataacccacttaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24559876 |
atcacttacagcataccctttgctctagcatcaatattctccagctcctcaggggtaggccaaggtaaaacacaatcacaagtcataacccacttaatta |
24559975 |
T |
|
| Q |
101 |
aacaattttactactaaacaaaagtgcttaatgatttgctttttgttcaannnnnnncagggttatctctaggagttctcaatcttgctattgtcatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24559976 |
aacaattttactactaaacaaaagtgcttaatgttttgctttttgttcaatttttttcaaggttatctctaggagttctcaatcttgctattgtcatacc |
24560075 |
T |
|
| Q |
201 |
acaggttagaatttaatacacttc-annnnnnnnnacttgttaattacttcactttatatattaaattaat |
270 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24560076 |
acaggttagaatttaatacacttcttttttttcttacttgttaattacttcactttatatattaaattaat |
24560146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 15123551 - 15123501
Alignment:
| Q |
19 |
tttgctctagcgtcaatattctccagctcctcaggggcaggccaaggtaaa |
69 |
Q |
| |
|
||||||||||| ||||| | ||||||||| ||||||||||| ||||||||| |
|
|
| T |
15123551 |
tttgctctagcatcaatttactccagctcatcaggggcagggcaaggtaaa |
15123501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University