View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10914_low_16 (Length: 240)
Name: NF10914_low_16
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10914_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 37049812 - 37049588
Alignment:
| Q |
16 |
caataaaagtagtgggtccttcgattccaagcgttgtggagcatatcttcaatactagtaatagtagcagcagtaaccgtgaaccatccacaacccatgt |
115 |
Q |
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| T |
37049812 |
caataaaagtagtgggtccttcgattccaagcgttgtggagcatatcttcaatactagtaatagtagcagcagtaaccgtgaaccatccacaacccatgt |
37049713 |
T |
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| Q |
116 |
cacaaaatcaagttcaaataatgggaaagctttcaaaaaacgaactttttcatcttctcttcaagttccaaagtccagagcaatcaaccattattttcaa |
215 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37049712 |
cacaaaatcaatttcaaataatgggaaagctctcaaaaaacgaactttttcatcttctcttcaagttccaaagtccagaacaatcaaccattattttcaa |
37049613 |
T |
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| Q |
216 |
tctagtagtaaagtcaatgagaaaa |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
37049612 |
tctagtagtaaagtcaatgagaaaa |
37049588 |
T |
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