View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10914_low_17 (Length: 239)
Name: NF10914_low_17
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10914_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 44254861 - 44254936
Alignment:
| Q |
106 |
gttgttaagaaaccatgaatgattgcatgcattgaacaaataaattacaaacattaaaatcctacaaaatagaatg |
181 |
Q |
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| T |
44254861 |
gttgttaagaaaccatgaatgattgcatgcattgaacaaataaattacaaacattaaaatcctacaaaatagaatg |
44254936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44254756 - 44254822
Alignment:
| Q |
1 |
attccttcgtgcttaccacatcagtcttgacatagatgaggagaacaattgcaagattaatgatata |
67 |
Q |
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| T |
44254756 |
attccttcgtgcttaccacatcagtcttgacatggatgaggagaacaattgcaagattaatgatata |
44254822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 44254950 - 44254978
Alignment:
| Q |
196 |
aatgaaaatgacctgagcagggtaaacat |
224 |
Q |
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| T |
44254950 |
aatgaaaatgacctgagcagggtaaacat |
44254978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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