View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10914_low_3 (Length: 452)
Name: NF10914_low_3
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10914_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 47242058 - 47242480
Alignment:
| Q |
19 |
atgaagtctgaaatagattcgcaacattaagtaccttgaaatattattgttttttagaattcaaatagattaaaatcaataacatcaaatatttacccaa |
118 |
Q |
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| T |
47242058 |
atgaagtctgaaatagattcgcaacattaagtaccttgaaatattattgttttttagaattcaaatagattaaaatcaataacatcaaatatttacccaa |
47242157 |
T |
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| Q |
119 |
ggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttatacattcatagtccagcaggctta |
218 |
Q |
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| T |
47242158 |
ggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttatacattcatagtccagcaggctta |
47242257 |
T |
|
| Q |
219 |
tatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgaca |
318 |
Q |
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| T |
47242258 |
tatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaaaacacaataacaggttttgaca |
47242357 |
T |
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| Q |
319 |
tcaccagctagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaatgaatcacagcaagtgcaaataaac |
418 |
Q |
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| T |
47242358 |
tcaccagctagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaactcctgaaatgaatcacagcaagtgaaaataaac |
47242457 |
T |
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| Q |
419 |
ataattagtccaattaacttcat |
441 |
Q |
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| T |
47242458 |
agaattagtccaattaacttcat |
47242480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 97 - 393
Target Start/End: Original strand, 47248581 - 47248877
Alignment:
| Q |
97 |
ataacatcaaatatttacccaaggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttata |
196 |
Q |
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|||||| ||| ||||||||||||||||| |||||||||||| ||||||||| |||||||| ||||| || |||||||||| ||||||| ||| ||| || |
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| T |
47248581 |
ataacaacaagtatttacccaaggatgtgctccaggccggataataaatctggcaagaaatataaccgatgcagccacaacagaaggcaagaaccttgta |
47248680 |
T |
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| Q |
197 |
cattcatagtccagcaggcttatatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaattaaaacaaacaaacgacaattagaa |
296 |
Q |
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|| |||||||||| || ||||| || |||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||| | |
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| T |
47248681 |
cactcatagtccaacaagcttaagtcagcaagatagctgcacaggaattcaaactgcaaattggaattctgcaattaaaacaaacaa---acaattagta |
47248777 |
T |
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| Q |
297 |
aacacaataacaggttttgacatcaccagc---tagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaaatcctgaaa |
393 |
Q |
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| T |
47248778 |
aacacaacacaagcttttgacatcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaa |
47248877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 47253396 - 47253569
Alignment:
| Q |
97 |
ataacatcaaatatttacccaaggatgtactccaggccggagaataaatctagcaagaaagataacagaagcagccacaattgaaggcatgaatcttata |
196 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| | || || |||||||||||||| |||||||| |||||||| || ||||||| |||||||||| |
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| T |
47253396 |
ataacatcaaatatttaccaaaggatgtactccaggacagattatgaatctagcaagaaatataacagatgcagccaccatagaaggcaagaatcttata |
47253495 |
T |
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| Q |
197 |
cattcatagtccagcaggcttatatcggcaagataattgcacagatattcaaactgcaaattggaagtctgaaa |
270 |
Q |
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||||||||||| | || ||||| || |||||||| || |||||| |||| | || || || ||||||||||| |
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| T |
47253496 |
cattcatagtctatcaagcttagctcagcaagatagttacacagaaattccatttgtaattttgaagtctgaaa |
47253569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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